RNA id: AMCG00010252


Basic Information

Item Value
RNA id AMCG00010252
length 5825
RNA type mRNA
GC content 0.40
exon number 13
gene id AMCG00010252
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 21081237 ~ 21105093 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCAATTGAGCAAAACTTCTAAAACAATACGCTATGATAACCTGAAATAGACTTAAATCCACTTAAACCATACATTCACTCACACGTGAGacagttttcaatttaaaactaCCAACAAGACGATtagcaattattattaaatacgcTCGACAACCGCGTTAGCAAAGCGAGAAAGGAAAAGCGCGACTTGACATACGACGCATAAGAAGTGAACTAACCGTGTGTCTGATGGCATTCACAACCGGCAAAACAACGACAACAAGACTTTGAAATCAACACCAAAGTGCTCCATTTCGCGGAAGTAACCAATGCTTACCTGGGTGCTTCGTTACAAAGACGCGGCGGAGTAAACGACACAGAGGAAGTCAACTTTCTAACATCTTCTTTTTGTCGTGTCTAGGTTCTTCAGTGGGTACAATGGTGAGCCGAGAGACCTTCTGCATGCCCCAGTTTATTCTACCCTTGAAAAGTCTTGTGGTGCCTGAAAATGCTGAAGGCCATCTCATCTGTACTGTTACTGGCTCCCCTGAGCACACTGTCACCTGGTACAAGAATGGGCAAATCTTCGACAATTTAAGTGGATGTTCTGAATATGAAATTTTAGTGGACAACAACATCCACTCCCTTCATTTGTACAAGTGCACTGAACAAGATGCAGGAGTTTACCAGGTGTCAGCAAGGAACAACCATGGGATGGCCAGCTGTTCGGCCGTGCTTGAAGTTGGCTCTTTGACACGCATGAAGGTTTTTGATGGAATGaagcaaaaatacaatgaaaataaagattgtCATGAAAGTGAGACAGGGAGCCGTCAGGAGCATGAGACAGTTAATCAGCTAGATGGGGACATCGACAAGAATATGGCTCATGAAGAAACTCCAATTAAGTCACATGTGGATTACCAGTCAGAAGTGGAAGAGAAAGCCACAGAACAACTCAATAACTGCAGCCAAAATAATGGACATAAACATATTGCAGAAGGGTTATGTGTTTCCCACACTTCCTTCCCTAGCCTTGAAGAGGACCACATGCTTGATAGCActgacacaaatgtatttaaaagcaacTCACATACTATAGTGACTGACACATACCAGATAAATGAAAACAGTGACTTAGCAAAGGCTATGACAATCCTTAGAGCACCTGTTGCTAAAGGAGAATTAGCTGAGATCTGCACAGGGGCCCAAGAAGAGCCCTTCTTGCCCATTAACTCTAAAAATGGATACAGTATTTCTAATGAGTCCTCCCTGGAGACCAAGCTTATCCTTTCTGTTGAGGATGACCAGGATATCCTGGATGAATTGCAGTGCTCTGATGTCATGACTGAGTACACCAATGCACTATGGCAGGCTAGATTGCAAGGGCATGAGTTGCCTTTAAAAGAAAGTGATCGCATTGATGATGTCCAAGCCCAGATGGAGGGCCACATTGGTAGccttaaagaaaatacaaagcagCACCAGGTGTCAAATTACTGTAAGGCTATGGAGCCTACCATTGGCTTCCCTGGTGATGAGTCAAGACTGAGGAAGCCACCTGTTCAATGTTACCCATCTGGGGACAGCTGGCCAAGCAGATACTCTGAGATGCTTTATACAGGCACAGAAAGTCAAGATGGCTTGCCTTCAGTAGGAATGCTAGAAGTGGCATCCATGGCAATCAAAGACCAAGCCAGTAAAACACaggaagggaagaaaaagaacatCATCTTAACAGAAGAGACATGTTTAcaagaaaaatgtgaaatgacGATAGagagaaaaatggaaaatgtacagCCCGGTCTACAGATTTTGGAGGTGTTTGGTGAAGGAAAAGAGGGCAGAGAAGGACCATTCTCAGAAGAATATTGCCCTGGAGGTACTTATTCAGAGGAAGAGAGTTGCTTGTATCATCTTAACTCTATGGATTCTAATAAACGTGGTGAGTGGGATATGACTAAAGCTGTATGCCCCTGTGAGTTCCTGGACTCTGCAGAATCTACAGCAGCTTTAAGTGGCAAAGCTACTGTGAAATATAATTCTCAACAAAATGCTCTTTTAgagcaaacagacaaaaagacaGAGCATAACACAAACACTTCTTTTTGCACGTTTGGTGGGGATCAGGCAAACACCTCTGAATGCCGAAGGGCTTCAGGAGAACTGCAGATGCCAGTGacAAATAATCACCTGGGGATTACAGAAGACCGCACTACACATCCTTGTTTTGATTTCAAGAAAGCCGTGGATGGAAGCAATAAATCTGAAAAGTATTACTTTGGCAAATATTTTACTAAGGAACATATCCATGAAGGGGAAAAGGGTACTGATGATAGTGATGAAAGACTGTTATCCATCATAGAAGCAGAATTAATTAAAGAGGCTCCACAAAAAGATAACATTGTctctgcaattaaaaacaatacaattgaaGGCTCACCAGACCAGAACCGAAAGTTTGAACATAACGAAGGAAAAGAATACTGGGCGCTGAAGGACCTTGCAGATCATCTTGGTTCTCCGGaggaaaatgtctgtttaattaCACTGAATGAAAAGGATATGACCCCAGAGACTCTTATGCCTTTAAATTCCCTTTTCCAGCCAAGTTCTATATTCAGTAAAGACTGCAGTTTGAATAGGGACCACTATAGTGGGAGTTTAATGACCGATCTTCAATTGCAGGGTATTGCACTACTTAAAACTGACAAGAACTCAATAAACATCAACCCATCAGCTGAAGTAAAGCGTATTGTCAATGAAGGGAAAGATATTTCTGCAAAGACAAATGACGAAAAGGTCCCACATGAATATGGTGTGCAATATAGTGATCTAATGCTGGACACCAAAACTCTGTCCCTCTCTGGAACAATGGGTTTTCATGAAACTCATACAGATAACAGAGATGCTTACACTAAAAATGATTTTCTGGAAAGTAACTTCTCACAATTCAGTAGTGCTCATCCACCTATTGTCAAAAAGCCAAGCACCAgtaacaaagaaacacaatccAATGAACAATGTCAGTCCCTATATGTTACATCCAGTCAAGTAACGTTTGAAAAAGATACTGCTGCACCTCCATTACCGAGGGATTTCTCACATCAAAGCCAAATTGGGTCAGAGGAACCTAGCATGTGTATTAAAGCATGTGATGCAGTCAGTGAACACAATAATGTTACACAAGCGGTCAGCAATCTCAAATGGTCTGTTAGGGAAGTTGGATACCAAGCAACTATTGACAGTCCTCTCAAAGGGACTAATGACTTTGCTGTTAAAAGACTCTTGCTTGAAAAAGAATCAATTCAACCAGAAAAAGATACTAATGCATCACCTGCTAAAAAGGAGAGAACCATAAATAAATCTCaaggcagaaagaaaaaaaataattctcagATAAAGGATGATGCGGAACTATCAGTGAAATCCCACGAAGACCAAGTGTTGCCCTTGATGGAAATAGAAAATTCCAAAGTGACAACTGTAAAGGGAAAAGCTGCAGCTTTTGAAGCAAAAAATCCTATTCTGggtaagaaaaacaatgaaaagctGACAATACTATCTTCAAaaaatgaactttttcagcCAGATAGCAGACAGAAACTACTACCACCCAAAGATTTCCCATTTAGAGAAAGACATAAGGTCACCTCTTTAGATAATTCTATGGATTACACCCCAACACAAGAAACCCAGTCAGACTGCATAGACCTGGTGGACCAGCATGAAGAAGATATTGCCAAGCGCATGCGTTTGTCAGAGGATGAAGCTATAAAAAGCttgtcagaaacaaaacaacagcagtcaCATTTGGGAGTGACAGAGTGTACTGGCCTACAAAACAATGAGGGGCATCATGTTACAGGAGGGAAGACCCATAAAAAGCCCCTTAATgagccacaaaaacaaaagcacaacacaaagcaGGAAAAGAAAGCCCCTAAAGTCCTGCAGAATATCCGAGCAGAAAATGTTCCAGAGAATTCTAGTACCATCAATCTCTGGTGCCAGTTTGGGGACATCCACACAGACTGTTTTATCACATGGATTAAAGATGGTTGTTCTTTGGCAGAAGTTAAGAGAAGCACAGGTGATGAAAGCCTTGTATCATTTGAGATTATCAAGGCTTCAAGTAAAGATCTTGGAATTTACAAGTGCAATCTCAACAGCCTTCATGGAAGTGTGTTCTCAGAGTATTGTCTCTCTGAAGAAGAAGGAGAAGATATTACATGTGCTCAGTTACTGTTCAATGAAGATTTTCTAAGTGAACAATATTTTGGGGACAATAAGCCCGGCTGCATTATTACTGAAGAGAGCCACTTTGAAGAGGGGATGCACCGTAAGGCGTTCAGGACAAGGGTTACAGAGGGGCTGTGGCCACTTTTCAGACCTGGGCACCTCTGTGTCCTCAAAGTGCACAACTCCATCAGCTATGGGACCAATAACAACGATGAGATCATCCAGAAGAACTACGCCTTAGCTGTAGAGGTTTACACAGAGGAAGCCAAGTCTATAGAAGCATTCGGAGAGGTTCCTGAAATCATTCCTATCTATCTTGTGTACCGTCCTTCCAATGACATCCCCTATGCTACTCTTGAGGAGGAGCTGGTTGGAAACTTTGTGAAGTATTCTGTTAAGGATGGCAAAGAAATCAACTTGATGAGGAGAGACTCTGATGcaggacagaaatgttgtaCCTTCCAGCACTGGGTCTACCAAAAGACAGAAGGCAACCTGCTTGTCACAGATATGCAAGGAGTGGGGATGAAGTTAACAGATGTTGGAATAGCGACCTGTAAGAAAGGATATAAGGGCTTCAAAGGCAACTGTGCCACATCCTTCATTGACCAGTTTAAAGCACTCCACCAGTGTAATAAATTCTGTGAAATGCTGTGGCTGAAGTCTCTACAACTCAGTCAACAGAAGCCAAGGAGAACCGCGGCTGTAGCAAAACCAAAGATGCAGCCCAATCCCAAGAAGCTGACCTTTACTCTGAACTCCAAGAGTAAATCTTGAAGAGATGTCCAAGAGAAAGAGGGAGTTCACCATGCTGGCATTAAtacttgtaaatataaaaagactGTTGTTCTCTATAAATGCCTGGAGATATTTTTAGACAAGTCACTTTCACCAGTATCatctttttattaattgtttgttcattttaacaacAGCACTGAATAAACgtcttacaaatgtatttgtgctcACCAGAAAGCCTTTTGGATAGAACTAGATTATTATCCCAAAACGCTCTGCCTGCTTATCTAAGCTTGCCTCAACTTGAGCTTAAATGCATTGCCTGTACTTTTTGGAGTATGAAGAAAACATCTGTAAAGCAAACAAATTCTTGTTGAAACAGTGCTAATTCACATTTTCACCTGTTTTAACATGGAATAACCATTTTCACATTGCCTGTGCAAAGAATATGCTAACATTATtccaaaaagttttaaattgtatattgtagCGTATACTGTCTTTGATACACAAAGTTAATTGCAGTCTTATTTTCTTGGGGGTATTGTTTCATCTgaatataatctgaaaatattcTTGTTTGTCAGATCTTCAACTTTCAGCAAAAGAGCTTTCAACAAAAATGCTTCATAGGAAATTGGTTCAATCAATGCCAAACCTTTCATCCAACTGTATGCAAGagattcatttatattttaattgattagaCACATGTTTGGTTTCAAAAAGGCATGCATGGAATAATATGGCAATTCATTATACAATAAAGGTGGGAGATGTTATATTGTGACTTCAAAATGAAGAGTAAACAGTGTACAATACACTATGAATTGCTTCTGTGagagtatttgtatttgtg

Function

GO: NA

KEGG:

id description
K08868 ALPK; alpha-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98755 lncRNA upstream 7163 21073536 ~ 21074074 (+) True G79190
TU98738 lncRNA upstream 28661 21050816 ~ 21052576 (+) True G79178
TU98715 lncRNA upstream 81225 20988160 ~ 21000012 (+) True G79157
TU98670 lncRNA upstream 308156 20769999 ~ 20773081 (+) True G79118
TU98664 lncRNA upstream 423403 20657349 ~ 20657834 (+) True G79113
TU98849 lncRNA downstream 426584 21531677 ~ 21532597 (+) True G79259
TU98862 lncRNA downstream 524065 21629158 ~ 21632876 (+) True G79272
TU98959 lncRNA downstream 897250 22002343 ~ 22002665 (+) True G79355
TU98961 lncRNA downstream 902298 22007391 ~ 22010144 (+) True G79357
TU98989 lncRNA downstream 939540 22044633 ~ 22045794 (+) True G79380
AMCG00010256 mRNA upstream 33760 21028778 ~ 21047477 (+) True AMCG00010256
AMCG00010251 mRNA upstream 58536 21004289 ~ 21022701 (+) True AMCG00010251
AMCG00010249 mRNA upstream 120681 20956381 ~ 20960556 (+) True AMCG00010249
AMCG00010245 mRNA upstream 140273 20931331 ~ 20940964 (+) True AMCG00010245
AMCG00010243 mRNA upstream 156567 20898450 ~ 20924670 (+) True AMCG00010243
AMCG00010250 mRNA downstream 300090 21405183 ~ 21422900 (+) True AMCG00010250
AMCG00010257 mRNA downstream 424530 21529623 ~ 21530318 (+) True AMCG00010257
AMCG00010253 mRNA downstream 528312 21633405 ~ 21656223 (+) True AMCG00010253
AMCG00010255 mRNA downstream 630078 21735171 ~ 21740568 (+) True AMCG00010255
AMCG00010254 mRNA downstream 635681 21740774 ~ 21746219 (+) True AMCG00010254
TU98308 other upstream 1941590 19138003 ~ 19139647 (+) True AMCG00010216
TU98291 other upstream 1993483 19087329 ~ 19087754 (+) True G78794
TU98227 other upstream 2159793 18919911 ~ 18921444 (+) True G78743
TU97819 other upstream 3727749 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 3803239 17274387 ~ 17277998 (+) True G78396
TU98991 other downstream 941025 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 1252876 22357969 ~ 22378809 (+) False G79420
TU99038 other downstream 1252876 22357969 ~ 22378809 (+) False G79420
TU99122 other downstream 1594649 22699742 ~ 22703374 (+) True G79475
TU99126 other downstream 1594716 22699809 ~ 22703409 (+) False G79475

Expression Profile