RNA id: AMCG00010256


Basic Information

Item Value
RNA id AMCG00010256
length 1524
RNA type mRNA
GC content 0.41
exon number 11
gene id AMCG00010256
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 21028778 ~ 21047477 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTATCTCTGAAGTGCTTTCCTGTCCTTTATCTTGTCGTATGCTGCAGTGCATTTGAAGGAAATATTTCAAGGAAATGTATGCAGGAcactaaaatgtttatttcagatcTAAATATGGAAAAACCAAGAGAATATGCTGTGCTGAAAACATTCCAGTATAAAAATAGGTCAATGGTACCCCCTATTCCATCTGTGTTCCTTCTGGACTCTTCACAAGATGTTTACATGACTGAGTGTTTTGCTAAAAGTGTATTCCCAGATGCATCTGCTATGATTTGTCTGCTTGTGTGCATTGTGTCAACTGCAATACCTCTTGGTGCAACCATATACACTGCTGTTCTCAAATGGAAACGTGGAAGAGAAATCCTACCTGGGACTGCCATcacttttaaatgcaattcaaaccatTATGGAACCCTCCCCTCAAAGGACATACCAAACAGCAGTAAAAATGGCAGTGCGGTTAAGGAGAACTGTAAACAGGAATGCAGTGATGCTGAAGAAGTCAACAGCAAAAAGAACTACTTGTATACTGTTTTGCAAGGCTTATCCCTGCAGAACTGGGTCTCAGGAGCCTTGTCAACAAGAAGCATGAAGGGGAGTTATTCTTCACTCAATGGGATCCGTGTCTTGAGTCTTCTCTGGATCATTTCTGGACATAATGTTCAGCTAAGTGCTTGGAACAACTTAGATAATTTTAAGCGATGGAAAGAGACAGTCGAGAGTAATCCCTTGTATGTCCTTGCATACAGTGGGCCTGTCTATTTAGCTGTAGACACTTTTCTGCTGCTTGGTGGTCTTTTGAGTGTAAAGTCTTTCTTCAGTTTAATTCAGAAAGCAGATGACACCATGAGTGTATCACTGGTTGCAAACTTTTGGTTCAAAAGGTTTAAAAGAATCCAGCCACTCCACCTTTACATAGTGTGCCTATGTATCGGGCTGCTCTCCATTATCTCCAAAGGCTCCTTCTGGTTCATCGTAGAGTTTGGGATAGACAACTGTAAAAAATACTGGTGGTCAAATGTATTGCttataaataacttattcaCAACTGCTGACATGtGTGCACCTTGGACTTGGTACCTTTCTGCTGATTTCCAGTTCTATATCACAACTCCTTTCCTTATTTTCCTCTACAGAAGGGCCTATATCAGCTACTTTCAGTATTATTATAACAAACCATACACAAGATATGGTTCATATTTGGTTGGGATTCTTCTAGGAATATTAATGAAGACTAAGAAAGGTGACATTTTGGAACATAAGTGGCAGGTTGTCCTCGGCTGGATTTCAACTTTCTCTGTCATGGCTTTATCGGTCGGCCTGGCATACGTTTTACAAGAGGTCCCTCAATACCCCTCAGCAGCTCATGCTGTTTACCAGGGCCTGCATCGCACTCTGTGGGCACTGGCTGTAGCTTGGATAATATTGGCTTGTGAGGAGGGATATGGAGTTTTACCTTTTCATGGCCAACCTCTCTCTGACAGTCATTTTGGGATACGCATTAACTGTGCTGATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98715 lncRNA upstream 28766 20988160 ~ 21000012 (+) True G79157
TU98670 lncRNA upstream 255697 20769999 ~ 20773081 (+) True G79118
TU98664 lncRNA upstream 370944 20657349 ~ 20657834 (+) True G79113
TU98660 lncRNA upstream 397324 20631212 ~ 20631454 (+) True G79109
TU98641 lncRNA upstream 561082 20467309 ~ 20467696 (+) True G79091
TU98738 lncRNA downstream 3339 21050816 ~ 21052576 (+) True G79178
TU98755 lncRNA downstream 26059 21073536 ~ 21074074 (+) True G79190
TU98849 lncRNA downstream 484200 21531677 ~ 21532597 (+) True G79259
TU98862 lncRNA downstream 581681 21629158 ~ 21632876 (+) True G79272
TU98959 lncRNA downstream 954866 22002343 ~ 22002665 (+) True G79355
AMCG00010251 mRNA upstream 6077 21004289 ~ 21022701 (+) True AMCG00010251
AMCG00010249 mRNA upstream 68222 20956381 ~ 20960556 (+) True AMCG00010249
AMCG00010245 mRNA upstream 87814 20931331 ~ 20940964 (+) True AMCG00010245
AMCG00010243 mRNA upstream 104108 20898450 ~ 20924670 (+) True AMCG00010243
AMCG00010244 mRNA upstream 154614 20847771 ~ 20874164 (+) True AMCG00010244
AMCG00010252 mRNA downstream 33760 21081237 ~ 21105093 (+) True AMCG00010252
AMCG00010250 mRNA downstream 357706 21405183 ~ 21422900 (+) True AMCG00010250
AMCG00010257 mRNA downstream 482146 21529623 ~ 21530318 (+) True AMCG00010257
AMCG00010253 mRNA downstream 585928 21633405 ~ 21656223 (+) True AMCG00010253
AMCG00010255 mRNA downstream 687694 21735171 ~ 21740568 (+) True AMCG00010255
TU98308 other upstream 1889131 19138003 ~ 19139647 (+) True AMCG00010216
TU98291 other upstream 1941024 19087329 ~ 19087754 (+) True G78794
TU98227 other upstream 2107334 18919911 ~ 18921444 (+) True G78743
TU97819 other upstream 3675290 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 3750780 17274387 ~ 17277998 (+) True G78396
TU98991 other downstream 998641 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 1310492 22357969 ~ 22378809 (+) False G79420
TU99038 other downstream 1310492 22357969 ~ 22378809 (+) False G79420
TU99122 other downstream 1652265 22699742 ~ 22703374 (+) True G79475
TU99126 other downstream 1652332 22699809 ~ 22703409 (+) False G79475

Expression Profile