RNA id: AMCG00010282


Basic Information

Item Value
RNA id AMCG00010282
length 2568
RNA type mRNA
GC content 0.45
exon number 22
gene id AMCG00010282
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23057620 ~ 23076233 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGTCACTAAGGAAGACGTGGAGAAGTTTCTCGATGGGAACCCACAATTTGCCAAGGGCTACTTTGACAAAAAGCTGAGACCAGGGGCGATCGCCGCTGTTCTGGGGCGCCAGGAGCCCTTGGTGGATTTTGCTTCTTTTAGGGAACTCAGCCAGGTAGAGGAAAGCGAAATTCTGTTTGAGCTCATCAGAGACATGCAGGAGAGCATCAACATGGAGAAAGTGGTCTTCAAGACACTCAAGAGGATCAGCTTCCTCATCCACGCCGACCGCTGCAGTCTCTTCATGTACCGCCAAAGGAATGGAGTAGCAGAACTGGCCACACGGCTGTTTAACGTCAATAAGGACGCCATCATGGAAGATTGTCTCGTATCCCCGGACTGTGAGATTGTCTTCCCTTTGGACATGGGGGTGGTGGGATATGTCGCCCAAACCAAGAAAACCATCAACATCAAGGATGTTAAAGAGAGCAGCCACTTCAGTTCATTTGTGGATGATTTGACGGAATACAAAACCAACAATATCCTTGCAACACCCATCATGAACGGCAAAGACGTGGTGGCAGTGATCATGGCGTTGAACAAAATTGACGCACCTCACTTCAcagatgaggatgaggatctttttttgaaatatttgaattttGCTTCTTTAAACCTGAAGATATACCATCTGAGTTACCTGCACAACTGTGAGACACGCAGAGGACAAGTTTTGTTGTGGTCTGCGAACAAGGTGTTTGAGGAGCTGACCGATATTGAGAGACAGTTTCACAAAGCCTTGTACACAGTGAGAGCGTACCTGAACTGTGACAGATACTCAGTGGGGCTTCTAGACATGACAAAAGAAAAGGAGTTCTTCGATGTATGGCCTGTCCTCATGGGAGAAGTGCCACCTTATACTGGGCCTGTTACGCCAGATGGAAGGGAAATAATTTTTTACAAAGTCATTGACTACATTCTTCATGGGAAAGAAGACATTAAAGTTATTCCGAGTCCACCAGCCGACCATTGGGCTTTAGCTAGTGGTCTGCCAACATATGTAGCTGAAAGTGGTTTTATTTGCAACATCATGAATGCAGCCTCGGATGAGATGTTCAAGTTTCAgAAAGAGCCTCTGGACAGCAGTGGCTGGACGATCAAAAACGTCCTGTCAATGCCCATTGTGAACAAAAAAGAAGAGATAGTTGGAGTTGCCACTTTCTACAACAGAAAAGATGGCAAGCCTTTCGATGAGCAGGACGAGACCATTATGGAGTCTCTAACACAGTTTCTTGGCTGGTCAGTTCTGAACACTGACACCTATGACAAAATGAACAAGTTGGAAAACCGAAAGGATATCGCTCAGGACATGGTACTCTACCATGTCAAATGTCGCAATGACGAAATTCAGAATATTCTGAAAACACGGGAATACTTTGGGAAGGAGCCTGCAGAATGTGAAGAGGAGGAGCTTGGCGAGATTCTGAAAAAAGAGCTACCTGGGAAAACCAAATTTGAAATCTACGAGTTCCGGTTCTCAGACTTTGACTGCACAGAACTGGAGCTGGTAAAATGTGGGATTCAGATGTACTATGAGGTTGGGGTGGTCAAAAAATTCCAGATTCCACAAGAGGTCTTGGTAAGATTCATGTATTCAGTCAGTAAAGGATACCGGAAGATTACCTACCACAATTGGCGCCATGGCTTCAATGTTGGCCAAACAATGTTCACATTGCTGACGACGGGGAAGCTAAAGAGGTATTACACAGATCTGGAGGTACTGGCAATGATTACAGCTGCTTTCCTACATGATATAGACCACAGAGGAACGAATAACCTGTACCAGATGAAATCACAAAATCCACTGGCTAAGCTCCATGGCTCATCCATTCTAGAGAGGCACCATTTAGAATTTGGCAAGTTTTTGCTCTCGGAAGAGtCTTTAAACATTTATCAAAACCTAAACAGAAGACAGATCGATCATGTCATTCATCTCATGGATATCGCCATTATTGCCACAGATTTAGCACTTTATTTCAAAAAGAGGACAATGTTCCAGAAAATCGTCGACTTGTCAAAAACCTATGAAGATGAGAAGAAATGGGTAGATTACCTGTCACTAGAGACAACAAGGAAAGAGATTGTGATGGCCATGATGATGACTGCATGTGACTTATCTGCTATTACCAAACCTTGGGAAGTACAAAGCaagGTGGCTCTGTCTGTAGCAGCTGAGTTCTGGGAGCAAGGTGACTTGGAAAGGACTGTGCTCCAACAGAACCCCATTCCCATGATGGACAGGAACAAATCAGCTGAACTCCCAAAACTCCAGTGTGGTTTCATTGACTTTGTCTGCGCCTTTGTCTACAagGAGTTTTCTCGTTTCCATGAAGCGATCACGCCCATGCTCGATGGCCTGATGAACAACAGGAAGGAGTGGAAAGCCAGGGCTGACGAGTATGATGCCAAAATGAAGGCTATtgaagaggagaagaagaaaaaggaggagGCTGCAGCTGCAGCCATGCAAGCTAATGCAAATGCTAAAGGAGCTTCTCAGTCCAAGACCTGCTCTATCAGTTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K13756 PDE6B; rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99127 lncRNA upstream 352512 22704789 ~ 22705108 (+) True G79476
TU99124 lncRNA upstream 354577 22699742 ~ 22703043 (+) False G79475
TU99066 lncRNA upstream 581637 22475437 ~ 22475983 (+) True G79443
TU99046 lncRNA upstream 673488 22379763 ~ 22384132 (+) True G79427
TU99032 lncRNA upstream 695657 22357969 ~ 22361963 (+) True G79420
TU99165 lncRNA downstream 11864 23088097 ~ 23088362 (+) True G79508
TU99166 lncRNA downstream 20358 23096591 ~ 23096838 (+) True G79509
TU99230 lncRNA downstream 109821 23186054 ~ 23188182 (+) True G79567
TU99239 lncRNA downstream 143304 23219537 ~ 23220917 (+) True G79572
TU99260 lncRNA downstream 239782 23316015 ~ 23326607 (+) False AMCG00010292
AMCG00010283 mRNA upstream 13377 23005244 ~ 23044243 (+) True AMCG00010283
AMCG00010281 mRNA upstream 139896 22895920 ~ 22917724 (+) True AMCG00010281
AMCG00010279 mRNA upstream 362665 22651029 ~ 22694955 (+) True AMCG00010279
AMCG00010278 mRNA upstream 515788 22530130 ~ 22541832 (+) True AMCG00010278
AMCG00010272 mRNA upstream 960690 22079288 ~ 22096930 (+) True AMCG00010272
AMCG00010290 mRNA downstream 33878 23110111 ~ 23138342 (+) True AMCG00010290
AMCG00010291 mRNA downstream 64249 23140482 ~ 23157907 (+) True AMCG00010291
AMCG00010293 mRNA downstream 233276 23309509 ~ 23313460 (+) True AMCG00010293
AMCG00010292 mRNA downstream 239849 23316082 ~ 23329546 (+) True AMCG00010292
AMCG00010297 mRNA downstream 369884 23446117 ~ 23450175 (+) True AMCG00010297
TU99126 other upstream 354211 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 354246 22699742 ~ 22703374 (+) True G79475
TU99036 other upstream 678811 22357969 ~ 22378809 (+) False G79420
TU99038 other upstream 678811 22357969 ~ 22378809 (+) False G79420
TU98991 other upstream 1010078 22046118 ~ 22047542 (+) True G79382
TU99599 other downstream 1756876 24833109 ~ 24837388 (+) True AMCG00010333
TU99797 other downstream 2916325 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 2936251 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 3304234 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 4480182 27556415 ~ 27557007 (+) True G80249

Expression Profile