RNA id: AMCG00010324


Basic Information

Item Value
RNA id AMCG00010324
length 219
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00010324
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 24251000 ~ 24251582 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCATTTTCCTTCGCCGCACACTTCTCGCCATCTTCAAGGAAAACAAGCGCCCTTCCAAAGAGATGCAGATCACCATCTCTCAGCAGCTGGGCTTGGAGCTGACCACGGTCAGCAATTTCTTCATGAACGCCCGGAGGCGCAGCCTGGACAAATGGATGGATGAAGGGAGCCCGGGGGCAGCTTCGTCCGCCTCCAGCACTTGTACCAAAGCGTga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99501 lncRNA upstream 324244 23920760 ~ 23926756 (+) False AMCG00010320
TU99463 lncRNA upstream 366193 23842459 ~ 23884807 (+) False G79749
TU99467 lncRNA upstream 397564 23851026 ~ 23853436 (+) True G79752
TU99462 lncRNA upstream 406416 23842459 ~ 23844584 (+) True G79749
TU99366 lncRNA upstream 552752 23688730 ~ 23698248 (+) True G79675
TU99545 lncRNA downstream 19693 24271275 ~ 24275684 (+) True G79820
TU99553 lncRNA downstream 43806 24295388 ~ 24298215 (+) True G79827
TU99555 lncRNA downstream 48717 24300299 ~ 24301869 (+) True G79829
TU99580 lncRNA downstream 349550 24601132 ~ 24650632 (+) True G79846
TU99583 lncRNA downstream 472252 24723834 ~ 24727757 (+) True G79849
AMCG00010323 mRNA upstream 21226 24228548 ~ 24229774 (+) True AMCG00010323
AMCG00010322 mRNA upstream 36665 24197476 ~ 24214335 (+) True AMCG00010322
AMCG00010321 mRNA upstream 127377 24081293 ~ 24123623 (+) True AMCG00010321
AMCG00010320 mRNA upstream 241147 23926572 ~ 24009853 (+) True AMCG00010320
AMCG00010319 mRNA upstream 333394 23897773 ~ 23917606 (+) True AMCG00010319
AMCG00010325 mRNA downstream 58779 24310361 ~ 24317700 (+) True AMCG00010325
AMCG00010328 mRNA downstream 362492 24614074 ~ 24625298 (+) True AMCG00010328
AMCG00010329 mRNA downstream 384575 24636157 ~ 24642653 (+) True AMCG00010329
AMCG00010330 mRNA downstream 421630 24673212 ~ 24704825 (+) True AMCG00010330
AMCG00010331 mRNA downstream 462065 24713647 ~ 24717375 (+) True AMCG00010331
TU99126 other upstream 1547591 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 1547626 22699742 ~ 22703374 (+) True G79475
TU99036 other upstream 1872191 22357969 ~ 22378809 (+) False G79420
TU99038 other upstream 1872191 22357969 ~ 22378809 (+) False G79420
TU98991 other upstream 2203458 22046118 ~ 22047542 (+) True G79382
TU99599 other downstream 581527 24833109 ~ 24837388 (+) True AMCG00010333
TU99797 other downstream 1740976 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 1760902 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 2128885 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 3304833 27556415 ~ 27557007 (+) True G80249

Expression Profile