RNA id: AMCG00010330


Basic Information

Item Value
RNA id AMCG00010330
length 7018
RNA type mRNA
GC content 0.41
exon number 19
gene id AMCG00010330
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 24673212 ~ 24704825 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGTAATCTGTTCCACATATAAAGTTTATCTATTCTCTGAAGGCTGCCGCAGACTGCACAAACAGTCCCCGTTGAAGCCAGCGCTTAACCTTAGGATTGGCAATGAAATATAGACAACATTGTACAATTACcctgttgttattttcttctacaTTCAATCCAGAAAACACTAACGAAGGGGACAGCCTTTCAGGATGCTTTCAGGGAGTATTCAGGGAATAACAATTAGCTCGCGCAAAACAGGAGCCCAGTCAATGAGAATGAATAATGCAGATACACCCCCTGGGATGGTCAATGATGTTCCCCTCTCACTGCTAAATCTGAAAGAGCTGCTGGAGAAGAAGGTGGAGATCTTTCAAAAGACTGTATCCAAAGAGGAGCAGAAAGCTGAAGCAAAGCCAGAAGCCATCTTCAGCAAACTCGGATGTCTGCAAAAGTACATTGTCCAAAGTCGAGAGTTTTCCATACATTTCAGAGACCTAAATAGGGAGACCGAGCAGGAAGTCATTCGAGTAGGCCAACGACTCAGAGAACTGAGGAAGCAGCAGGAACAACTAGGCTGTGAGTTAAAAGATTTGGACAGACAACTTTCCGAGACTGTGACCCAGCTGCAGAGAAACCATTCCATTGAGCTGGTGAGAGTGCAGCAGCTCACAGAAGAAGCCATTGCCAGAAAGGAAGTGCAGGTTTTGCATCTcaaagagcaggaggaagacctgACAGCCCTTCAGGCGATGCTGGGAGAAGACGTGCAGCGATACGAAGAAGAGGCCAACCATCTTCAGAACTTCTCAGACAAACTGTCCAGTGAAATGGAGGGAGACAGCCAATCCAGGCCAGAGAAGAGCGTGggAACTGTTGGCAAGGAGACTAGAAGAGCCACGGAAAATGGCGTATCTGTTCAACAACAAGCAGATAGTCATTCGCTTCATCAGAACCAGATGGAAAAAGGGCTGCCTTCTCACTCTGTTACAGGACACAGCAGCACTCAAAATGGAGACAGTGTTGTATCCTCCAAGTCACCTGGtggcaaacaaactgaaagcatTACTAGAGAGGCCCCTTCCAGTGCTGAGCTTCACACGAAGATGGCTTCGACAAACAGAAGTGCATCTTTCAAGAAGGAAACTAATTTGAAACGGTCAGGCAGTGTAAAAGATCTCATTTATAAGTTTTCTGGAAGTGAAAATGGCAAAACATCTCCGACTGTGACTGGTGATCACAAGACCGAAAGGAAGTCCTTGGAAAAGAGTGGTTCAGACTCTGAGTTGATGgtggaggagaagaggaagcCAGGAGGTATTAACTCCCTGTTCAGTAAGAGCGATGGAGGGACACTGAGTGACCAGAGGAAAACCAGCAACAATGAGAGTGTGCTGCCCACTATCAGTGTGATACCTGCACCAGCGATATCAGTATCTGAACAAAACACCTACCAACACAATGGATCTCGTTCTCTTGAAAATCTCTCTGGGTCCAATTTTTCTGGCCAGAGCAACCCAGCACCGGACACGTCTCAAAACAGGGGCAGTCTTCTCACTGGGTCAACAGAGATCCCACTGGCGTCAGAGCCAAGTGGGAAAGTTTTGATGAGTGGCATAGACAGCCCATCTCGCGTATTCAACAGCCCCTATAAGACACCATCTCTTGACTATGATCGAATCAATAGAATCTCGGAGTATAAGAGTATGCCAGTTCTGTCCCCTGCCACATCTGAAATCAGTCTCTTCAACAGCAGAAGCAGTAGCCCTGTTCCCTCTCCCACAATGCTTTCCCCTCGCAGTCGATTCACTGCCTATGACACCTGGAACAAACAGAGGGCGGTAATGACTAGTCTGCCTGCACTGAGACCTGGAGTTCACAACAAACGAGATTATATTGAAGAACTCACACGGCTTTTAGACAACTGTCAAAAGAGGAACCAGTTTCTGGAGGCAGAGAGTGTGGAGATGAACAAGGAGAGGAACCAGATCCGCTTCGAAATGAGAGGGCTGTTGGTGAGCAACGAGGACATGCTCAGGACAAATACCCAGCTGCAAGGAGAACTGAAGAGGGTGATGGATAGAGTGGTGGAGTTggaaagagaaaacacaatGCTGAACGACCGCTTTGCACACATGGAGgaaaacatggagaaacaaaatcagcaaACCCAGGATCTTTCTGAGAAACTGTGGCTGACAGAGCGGAAAATGGAAGAGCttgaaacagaaaagcagaacCAAGACAAGATTATTGTTGACCTGAGAAACAAACTGGGAGAGGCtctccagatctcaacccagtccACAGCTGAGTTGAACCTGTTCCAGAAGCTGAAGAATGACTCCCAGCAGCGAGTTGCAGATCTGGAGGAGAACCTTCTGCAGAGAACACAGGAGTTGCAGAAGGCCCAGATGATTGTCAACCGATTACAAGGAGAGgtGTCCGGTAAGCTGATTGACAAGGAGAGGTCTCTGGAGGAGGAGATTCAGCTGCGGGAACGTCTGCAGCTGCAGTGCAAGCAGGCCGAGAGGAGCCTGGAAGACCTACAGATGGAGGTCCAGACTGCAGTCCAAGCCAAAGAGGACATTGCCAAACACCTCAAACTGGCACAGGAAAAGATGATTGAACTGGAGAGCGACTTGGAAGAAATGCATGACAATGAACAGAGGTGGGCTGTCAAGAACAAGAGAGCCCAAGAACAGATGGATCAACTTCAGCTAAAGTTGATACAAGAAAGAGATTTGAGGGAACAGCTGGACTGTGAGAAAGTGATGCTGGAGAGACAGATCAGGGACCTGAGAGTTGAGGTTCACGAGCTGCAGAACTCCAAAGTGCAGGAGGATGTCATGAATAAAATCATTCTGACGAACAACATTGGGAAACTGGAGAGAAAGATTAAAGAGCTGACTGACCAGGTGGAGGAAGAACACCGCCTGGCGGAAGAACAGAAAGACCTGATGACCCAGCGGATGCGCACCTTGAAACGGCAGCTGAATGAGGCCGAGGAGGAGATGAGCCGCAAAGAGACGCAGTTCCGACTCTCTCAGAGAGAGCTGTCGGAGGAGCGCGAGGCCATCAGCCGTCTGCAGAGGCAGCTCCTGGACCAGCAAGTCCAGATAAAGCGCAACGAGTCTCTTAAAATGAGGCAAGCCCTGGACAACTTCAGACTGGACCTAGACAGTCAGGATGAAGAAGAGGGCTCTTCAAAGCAACAAcccacacattttatataatgttcTTAATATACCAGCTTTAATAGTATCTGCAATACCTACTAGGAGGAACCCCTATTCTCACAATCTCCATCACTTAATTGTCTGAAATAAggaaacgtttttttttttgttttttttttaatctaaggACTTCCCaagcacacacatttttaatcgGTTAATTATTAACTGAGGAATCATAAACTGGGTACATTTCCAGAATCTGGATGAATCTCTAGAATGGCAGACTTTTATATTATGTTGGGATTTTCTGGGGTTGCTTAAATGAGTCTGCAGGGAAAATGtacccccaaaaaaaaatatatatatgtaaataatgttcAGTACTTCTTTCTGctatgttgttgttgctgctgcaatataaatgcatagggagggattattattattatttttttctttagtcaTGAGCTTTCTTTTggaatataattgcatttttgcaTGATCTTTTAGAGAAAGTATTTAGTCTTAATTCAAGAATTGTAATAGTTTGGATGTATAAGAGCAAGGTCTGCTCAGAAATCTATTATATATCTAAACATCTGAGGAGTTGACAGGGATTTGTATCATTATGATTTGCAGCACTAAGATGCACTTCCATGTGGTTTCATTGAACAAGATGCTGAACTGTATGTTATTAAAGCTGTTTTGCACGTGGAAAAAGCTTTCTTCATGTGCACCCTCACCTATCCATGCTTTACCCTCTTAAACCCGACTCCAGCCATGGACTGAGCTCAAGCAGACCACAGAGTTGAGGATGGACactgtccttttgttttctataaaacaAAGTATGTATATGCTGGAGAGACAGAATGTGATTAAAAAGGAAACCTTATAGGAAGATGAAGTTTAAGCTATGGATTTCAGGATTTGCCTTGGGATCATCCAAAATGCAGAGACTCATCTCATGATCTCATTTGAGAGCTGCCTTACTATTTTAAATTCCCTTTGGTAAAAGTGGTGACAATCACCTCTGGATCAGTTTTGCAATGTGATCACTACAAAAGCGGGGCAGGGTTATCAGATCTTGCGAGGACTACATTTGGATCCCCAAATGTGGATGAAAGCTCAAAAGAAAGAATGGGACACTGCTGTTTGTTCTGCAAGTACTATTCAAATCCTTTCTTATCCAGGAGCTTAAAAGAAGATAATCAATGTTCACTATGGGATGTCGTTTTCACTTGGAAGGCCCCAGTTTCTGATGTGGGATTGGAAGTAATGGCAAAAGCAAGCGCAGCAGCAGAAACCTGAAGAGAAAAATGAACTCATACCATCACTACATGTTTTGATACTTAAAAGTAATCTGCATAAGACCTGTAGTGGGTCCCCACACCTCCAGATGCAGGCTTCCTAGGATGTCTGTGTTGGCCCAAATTTCATACTCACTGTTTATGTGACTATTTTTGATtggcaaatgaaaaacatggtCTTTAGTGTGGTGAAATCCTTTGAATCAAGCAAGGTTGACGCCTAAAGCCTGAAGCCTAAGAGAGTCGGTGGAAAAAGGTTTCCAGAACATTAGGTGAAACTGCATTGACCACATAGTGGTTATGCTATTACTTTTTTTGCCTCCTGTGTTATGTTCTCATAAGTATGTTTTGACCTTCCCTCCAGTAGGGATAACCGAGTCAGgtactttgtgtattttgtaagaGACgggagaaaaaatataatcaggGTAATATCTGacaaatgtatcattttaaattacaaatgccAAAAAGGAAAGTTTCATTGCACACTGCCAGCCACACCCCCATCCCCCATCTCAATGTCAGTGTCAGTTTTCGATCGGCATTATTGAATGTTCAGTTATTTAAGTTTGTACATTTAAGCATGTTCCTAAAACAGTGTTGGGTTCAGCAAATGTTAAACACTGGCTTACATTGTGGTTGGCTAGGGATATGGGGTCatatctgtatatttatgtattttgtcgAGTACTCTAGTGTATAGGTTTAAACTTCTTTTGCAGTGCCACATGTTGGGAACTACTGGTTTACAAAAAGGGCCAAACTTACAAATCttacaaaatacacacttttctagtgtttctttgaaaacatttgtttgagGTTGTTGTTAATCCTCTGAGATTCATTTGTAGTTCTTTTTAGACATGTTTTAGAGTGAAGTTCAGCTACTAtgtcagaaaaacacaaacaaaatgttcaggGAAGAATTTAAGTAAATATGATGCATTAATTGAAGGCAGTAGCCAGTGCTGctaaatcaaattaatcttCCGGAGGTATTACCATTTGACAGTTAGCAGCTtgaacagtattttttaatcagtaaATGAAGTACCCTAGATGGTGAAGACCTAGCACAAGCATGGCATGACAGAAgagaacatttaataataagCCATGTTATATGTAAAAGTGTGCACACTGCAGTAGTATcatgaacatgtttattttgctcCAAATACCAATTGAATGCTCACTGGCTTAGTTCACAatcacaatgtttaaattacaccaagcaaaattgtgttttatgttttgtatacaaATGAATTAAGAACATGTATTTTGGGATCACCgttttaaaatagttcagtACTATAATGTACACTTTTTGCTCTCTGAAGAGGAAGCCAGTTGAATTATCTAAAAATGACTGGACTGCTTCTAATGATGGATTTGTTTGATTCCTTGTCATGTAactaaaaatgcagttttcccTCTTAAATGCACTTTAGAGTAGAGGTGTTCTTTTACTGTTTGAGGACTTGTTTTATTGGTGCTTTAAACCCTCAGCTGCATGATGTGGGAAAGGTAAATTGAGTTATGTGAGTAATTTGCAACATAAATGAACAGGCTGAAGGTTTGGAAACCAGGAGGCCTCTGAGGCGTGGAATTGTTTATATTCGCTTCTTCTACTTGCatctaaaatgtgttttcccatTTGTCCTGGGTTTTTCTAGGTTATAAAATTAGATACTTTACTTTAACAATGGTATATACTCTGGGCCTTAATGCTACAGTCAAAccttatgtaaataaataaaatacatggtaGTTTAATAATAGCCCCCACCCCAAATAGTTTATTGATGATTGAAGATGACCAATGTGTTTTTACTCATACTATGGTATTATTGTCATCATTGCTGTAAGCCTATCAGTCAGATGTTATTcccaaataataatttgttgcCAGTATAGTAAATAACCGTTTGAGAGAGGCCTACATAATATCAGCAAGAAGGTAACTGGGTAATTTGAAACCATGCTTTgtctaaatgcacacacaagcctgttttcttttaaaatggttGAAATAATTCAAAAGACCTtctaacatttatatatatagtcaaatgaaatcatgtaaattatattaaatgaacACTCTAAAATGGGATTAGATTTGGAAATCGAGCTCACTACCATTAAACATGTAGGGAATTGAAGGGAGGGACATTTAAACACCATAAAGGGACACCGTACAATTTAGTTTTACGTAACCCCTCTGGGCCAGTTTACATGTAGTTTACATGACTGAGGGgtactgaattttttttttgtaaatgtggtATTCTGATTTCAAGGCAAACATACCTTCAGAGACTCTCACTAAATATTCTGAAATTTTGCTAATGtttgttaagaaaatatatgcacattttattatttttttaaatgggaaaaagCACAATTATTTTAGTCTACTTGTATTCtcttactgtatgtatattttgaaaaggttgGTTAAGAgaagatgtatttattcttttataaaaatgtattcttcgGTGAATTGTAATAAGTTGGTAAATgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99580 lncRNA upstream 22580 24601132 ~ 24650632 (+) True G79846
TU99555 lncRNA upstream 371343 24300299 ~ 24301869 (+) True G79829
TU99553 lncRNA upstream 374997 24295388 ~ 24298215 (+) True G79827
TU99545 lncRNA upstream 397528 24271275 ~ 24275684 (+) True G79820
TU99501 lncRNA upstream 746456 23920760 ~ 23926756 (+) False AMCG00010320
TU99583 lncRNA downstream 19009 24723834 ~ 24727757 (+) True G79849
TU99600 lncRNA downstream 128284 24833109 ~ 24837388 (+) False AMCG00010333
TU99677 lncRNA downstream 293469 24998294 ~ 24998497 (+) True G79924
TU99709 lncRNA downstream 877493 25582318 ~ 25582575 (+) True G79952
TU99820 lncRNA downstream 1422258 26127083 ~ 26127308 (+) True G80032
AMCG00010329 mRNA upstream 30559 24636157 ~ 24642653 (+) True AMCG00010329
AMCG00010328 mRNA upstream 47914 24614074 ~ 24625298 (+) True AMCG00010328
AMCG00010325 mRNA upstream 355512 24310361 ~ 24317700 (+) True AMCG00010325
AMCG00010324 mRNA upstream 421630 24251000 ~ 24251582 (+) True AMCG00010324
AMCG00010323 mRNA upstream 443438 24228548 ~ 24229774 (+) True AMCG00010323
AMCG00010331 mRNA downstream 8822 24713647 ~ 24717375 (+) True AMCG00010331
AMCG00010332 mRNA downstream 99315 24804140 ~ 24818166 (+) True AMCG00010332
AMCG00010333 mRNA downstream 128246 24833071 ~ 24837552 (+) False AMCG00010333
AMCG00010338 mRNA downstream 146962 24851787 ~ 24896459 (+) True AMCG00010338
AMCG00010344 mRNA downstream 740247 25445072 ~ 25445484 (+) True AMCG00010344
TU99126 other upstream 1969803 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 1969838 22699742 ~ 22703374 (+) True G79475
TU99036 other upstream 2294403 22357969 ~ 22378809 (+) False G79420
TU99038 other upstream 2294403 22357969 ~ 22378809 (+) False G79420
TU98991 other upstream 2625670 22046118 ~ 22047542 (+) True G79382
TU99599 other downstream 128284 24833109 ~ 24837388 (+) True AMCG00010333
TU99797 other downstream 1287733 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 1307659 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 1675642 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 2851590 27556415 ~ 27557007 (+) True G80249

Expression Profile