RNA id: AMCG00010332


Basic Information

Item Value
RNA id AMCG00010332
length 2576
RNA type mRNA
GC content 0.53
exon number 16
gene id AMCG00010332
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 24804140 ~ 24818166 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGAAAACAGGAAGTAAAGATCACAAGGATTTAAAAATCCAAAAACATTAGGGGACGGGTGAGGACACGATGGGGTCCGCAGTGGAGAGGACTGATGACTTGGTCAAGGAGTACTTGATCTACCGGGGATTCACAAACACCCTCAAACACTTAGATGCTGATATCAAAGCTGACAAGGAGAAAGGATTCCGAGTGGATAAAATCATCGAGCAGCTTCAGCTCTTCATCCAGAGCTATGACCTGCCGGCGCTCAAGGAGTACTGGACATACCTGGATCGCCGGCTCTTCAGTCGACTGGAGGATGTCTACCGGCCCACTGTGAACAAGCTGAGAACCAGCCTCTTCCGTTACTACCTTGTGTACACAGTACAGTCGAACCGCATTGAAAAAACCCAGGAGTTCTTTCAGAAGCAGGCGGTTGAGCTGCAGGGCCAAGCAGAGTGGCGGGACTGGTTCATCCTCCCTTTTGTCCCGGATCCCGGGCAGAACCATACCTTCTCCCCGTACTTCTCCCGCCAATGGGCCGACACTTTCCTGGTCTCTCTGCACAACTTCCTGAGTGTCCTCTTCCACTCTATGCATATCCTTTTGGGTACAGCCACTCTAGGACTAAGAATTACAGCTTCCTTGACCACCTCACCCCTGCCAGTGCTCCTGAGCTTTGACTCAGAGGTGCAGAGAAGTTCTGCCGCACAGGAGGAGAATGAGCTACTGCGCCATACGGTATTTGCATTACAGGCTGAGCAACCACGACTGAGGAAGGATGAGGAGATGGTGCATCACAAACTCCCGCCCTACGTACAGAACATGGACCGACTTGGAGACAGTGAGCTGGATTTGGTATCTAGCCAGCGCAATGTTAACCTAGCCAGCCAGCCTCGAGGGGGCTTCTTCCTCTCCACATTCCTCCCCCAAGGCAAGTGGGCACCTGCCAAGCCACCCCAAGGAGCTGGATCTTCGCCAACACAGGCCTCCATGGGGAGGAGAGACACTGCAGCCAATCAGTCTGTGAAGTCAAAGGACCCTCTGCCATCTAAGGATTCCAAGCCTGTTCCCAGTGGGGCAGGAACGAACGACCAGCCTTCCAGTCACTCCAGGCAACGACGACACCAGGACcatgaaaaggaaaggaaagcgCTGCTCTCCAAACCGCCAGTTCAGAGCACTGAGAGGAGTTTTGACACAGAGCCCCACCCTGAGGGAGCGGCTGACCGGACAGAATCACCAACCAATCAGATGCGAGGCACCGGACAGGGGGGTGGATCAGTGGAGCAGCCGTTCATTAAATTGAGCCAGGAGGAGTATGGCGAGCACCACTCTTGCATCATGCACTGCAGGGTGGATTGCTCAGGGCGCAGAGTGGCAAGTCTCGATATTGATGGAGTCATCAAGGTCTGGTCCTTTAACCCACTCATGCAGACCAAGGCCACAATCATGTCTAAGTCTCCTCTTCTGTCTCTCGAGTGGGCCACCAAGCCAGACAGACTGCTGCTGCTGGGAAGTGGTGTGGGAACCGTGCGGCTGATCCTGTCTCTGGCCTGTAGCCCCAGTGGGACGTCCTTTGTGTGCTCAGCAGCTGCCCACAGCCCTCGATCGGGGAGCCTGAATGAGAGTGGGGGTCGaatctctgtccctgtctcagGACAACTGCTGCTGTGGGACACCAAGACCGTGAAACAGCAGCTCCAGTTCTCTCTTGAACCTGGGCCCGTGGCGATAAACTGCACAGCCTTCAACCACAATGGCAACCTGTTGGTCACTGGGGCTGCTGATGGGATAATCCGACTCTTTGATATGCAGCGGTATGAGAGTGCAATGAGCTGGAAGGCCCACGAGGGAGAGGTGTATTCAGTGGAGTTCAGCTACGATGAAAACACCGTCTTCAGCATCGGGGAGGATGGCAAGTTCATTCAGTGGAACATCCACCGCAGTGGGGTGAAGCAGTCTGAGTATTCCCTGCCCCAGGACGCCACGGGCCCCTTTGTGCTCTCAGGGTACAGTGGGTACAAGCAGGTGCAAGTCCCAAGGGGGCGGTTGTTTGCCTTCGATTCAGAGGGGAACCACGTACTGACCTGTTCCAGCACCGGAGGACTCATCTACAGGCTGAACGATGGGGAGAGTGGCCTGGAGAGTGTGCTACCTCTGGGGGGCCACAAAGCGCCCGTGGTCACAGTGGACTGGTGCACTGCCATGGACTGTGGCACCTGCCTCACTGCCTCTATGGACGGCAAGATCAAACTGAGCACACTGCTGGCACAGAAATCCTACTAGAACCCCTGCTGGACACGTAACAAATGTGGGCCACAGCCAAGTAGATCTACTGTGTCTCATTGCCGTCTGACTGCGGCCATCTTTGATTACACTTCACATAAGTAATGACTAAAATGTCCTAAACATTCTTAGCTggtatgttttgcttttgctgcCTTgatgtttacttttgttttgtcagctGTAGCCTGACATTCGCTACATCTTGTTCTGTTAGTAAATTAGTTTACTAATATcatatgtaatgtttgtaaatgtacagcGCAAATGGGTACTTGTGCCACTAAAAAGCTTCCTCTAAaaca

Function

GO: NA

KEGG:

id description
K24760 WDR91; WD repeat-containing protein 91

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99583 lncRNA upstream 76383 24723834 ~ 24727757 (+) True G79849
TU99580 lncRNA upstream 153508 24601132 ~ 24650632 (+) True G79846
TU99555 lncRNA upstream 502271 24300299 ~ 24301869 (+) True G79829
TU99553 lncRNA upstream 505925 24295388 ~ 24298215 (+) True G79827
TU99545 lncRNA upstream 528456 24271275 ~ 24275684 (+) True G79820
TU99600 lncRNA downstream 14943 24833109 ~ 24837388 (+) False AMCG00010333
TU99677 lncRNA downstream 180128 24998294 ~ 24998497 (+) True G79924
TU99709 lncRNA downstream 764152 25582318 ~ 25582575 (+) True G79952
TU99820 lncRNA downstream 1308917 26127083 ~ 26127308 (+) True G80032
TU99958 lncRNA downstream 1555486 26373652 ~ 26375356 (+) True G80138
AMCG00010331 mRNA upstream 86765 24713647 ~ 24717375 (+) True AMCG00010331
AMCG00010330 mRNA upstream 99315 24673212 ~ 24704825 (+) True AMCG00010330
AMCG00010329 mRNA upstream 161487 24636157 ~ 24642653 (+) True AMCG00010329
AMCG00010328 mRNA upstream 178842 24614074 ~ 24625298 (+) True AMCG00010328
AMCG00010325 mRNA upstream 486440 24310361 ~ 24317700 (+) True AMCG00010325
AMCG00010333 mRNA downstream 14905 24833071 ~ 24837552 (+) False AMCG00010333
AMCG00010338 mRNA downstream 33621 24851787 ~ 24896459 (+) True AMCG00010338
AMCG00010344 mRNA downstream 626906 25445072 ~ 25445484 (+) True AMCG00010344
AMCG00010345 mRNA downstream 762262 25580428 ~ 25590886 (+) True AMCG00010345
AMCG00010346 mRNA downstream 963229 25781395 ~ 25782444 (+) True AMCG00010346
TU99126 other upstream 2100731 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 2100766 22699742 ~ 22703374 (+) True G79475
TU99036 other upstream 2425331 22357969 ~ 22378809 (+) False G79420
TU99038 other upstream 2425331 22357969 ~ 22378809 (+) False G79420
TU98991 other upstream 2756598 22046118 ~ 22047542 (+) True G79382
TU99599 other downstream 14943 24833109 ~ 24837388 (+) True AMCG00010333
TU99797 other downstream 1174392 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 1194318 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 1562301 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 2738249 27556415 ~ 27557007 (+) True G80249

Expression Profile