RNA id: AMCG00010333


Basic Information

Item Value
RNA id AMCG00010333
length 1599
RNA type mRNA
GC content 0.38
exon number 7
gene id AMCG00010333
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 24833071 ~ 24837552 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTACCTCAATGGATTGATTACAATGCCTAGTTTGCCTTGTTTGAGTCGGTATGTTTATTGCAACACCGCTGTATCCTATTTCagggttttcttttccttggttattgtctgtttttataATCAATGAACGAAAGCCCAGCAATTTAAACAGTCCGTGTGTAACACAACATAGTTTTGGAGCTGGCTGATCAGGCTTCGGTGCTTTTAAAGGATGGATTTCCTCAAGGTAGCAGATGACATTGTGCAGAAGTTGTGGTCTTACAACCAAGATGAGTCTGGCTGGACACTGGCGAAGAATTCAAAGGATGTTGTTGTGTCTTGGAAGCCATCCAGCGAGTATGGAGGAAACATGTACCGTGGCGAGGGCATAATAGAGGATACTCCAGAAAACATAATTCCTTTCATGTACTTACCTGAACACAGGATGCATTGGGACAAAGCCTTGAAATCTTACACTCTCTTAGAGAGAATCGATGAGGACACCGCGATTTGTCACACAGTCACCCACAGTTACGGAATGGGATTAATTTCATCCAGGGACTTTGTTGATCTTGTCAGGGTTAAAAGATATGAAGGGGGGATAGTAACTACCAATTGTAAactcTTAACCCCGGACTTAATTCTCCTGTTTACAGCTATGAGTGTTGATTACCCAGAAtgccctccttctccttctcacATCAGAGGACATAACAACCCCTGTGGATATGTGTGCTCACCTCTTCCACAGAGTCCAGGCCACTCTAAACTGGTGGTGTTCATTCAGCCGGACCTGGGAGGGAGGCTGCCGCGATCGCTAGTGGAGTCCGCCTTACCAAACAACATCATCAACCTGATCAATGACACGCGTGCTGGAATAAAGGCCTGGGGCCGGTAATAGAGGAACCCTGAATAGACATTGAAGACGTAAACTGAGCTAAATCATTTCTATTCCATACaggtggtatttttttttttaatatatattttaatatgtccTCTGTGACCCATTTTTATCAATCacttttacaaattaattatattagaaCCTTGCTGCTGTTACACCAGATGACCTCTAAAAACTTGTGATTATGATGTAAAAAAGTGGCCAGTAATTATAagcataaatatgaaaaatcatGTACtgtaataaaagaaaagagaactCTCAACCAAAGTCAGGTTTCGTAAGCTTTGGAACCATTGTTAATGTCTAGTTGAGCTATCTTAAAATATagtaaaactaatttcttaaaGATGGtgctaaaatacaaaaataatgacattagcCTTTTTGGCATGTGTATTTAATTGTCAAATTGGGTAGCATGCAACTGTTTTAACATTCCTTATTTGTCAATTAAACATTAGGTaagcaatgtaaataaatacatctaattGTATGACTGATGAGCTGCAGCTATGAACtccatttgaaaaataaaatgatttaaggAAGTCTTGCTGAAGTCATCAACCAATTTATATTATATCCACTTTTTAACCTGCTGATTAACaagtacatttgtgtttgttattataCCTACTAAGtaatttcaaatgataaatattttaatgattgctCTTTTTCTGTGATACATTACAAGAAAACACTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99583 lncRNA upstream 105314 24723834 ~ 24727757 (+) True G79849
TU99580 lncRNA upstream 182439 24601132 ~ 24650632 (+) True G79846
TU99555 lncRNA upstream 531202 24300299 ~ 24301869 (+) True G79829
TU99553 lncRNA upstream 534856 24295388 ~ 24298215 (+) True G79827
TU99545 lncRNA upstream 557387 24271275 ~ 24275684 (+) True G79820
TU99677 lncRNA downstream 160742 24998294 ~ 24998497 (+) True G79924
TU99709 lncRNA downstream 744766 25582318 ~ 25582575 (+) True G79952
TU99820 lncRNA downstream 1289531 26127083 ~ 26127308 (+) True G80032
TU99958 lncRNA downstream 1536100 26373652 ~ 26375356 (+) True G80138
TU99960 lncRNA downstream 1567054 26404606 ~ 26409613 (+) True G80140
AMCG00010332 mRNA upstream 14905 24804140 ~ 24818166 (+) True AMCG00010332
AMCG00010331 mRNA upstream 115696 24713647 ~ 24717375 (+) True AMCG00010331
AMCG00010330 mRNA upstream 128246 24673212 ~ 24704825 (+) True AMCG00010330
AMCG00010329 mRNA upstream 190418 24636157 ~ 24642653 (+) True AMCG00010329
AMCG00010328 mRNA upstream 207773 24614074 ~ 24625298 (+) True AMCG00010328
AMCG00010338 mRNA downstream 14235 24851787 ~ 24896459 (+) True AMCG00010338
AMCG00010344 mRNA downstream 607520 25445072 ~ 25445484 (+) True AMCG00010344
AMCG00010345 mRNA downstream 742876 25580428 ~ 25590886 (+) True AMCG00010345
AMCG00010346 mRNA downstream 943843 25781395 ~ 25782444 (+) True AMCG00010346
AMCG00010347 mRNA downstream 991647 25829199 ~ 25833535 (+) True AMCG00010347
TU99126 other upstream 2129662 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 2129697 22699742 ~ 22703374 (+) True G79475
TU99036 other upstream 2454262 22357969 ~ 22378809 (+) False G79420
TU99038 other upstream 2454262 22357969 ~ 22378809 (+) False G79420
TU98991 other upstream 2785529 22046118 ~ 22047542 (+) True G79382
TU99797 other downstream 1155006 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 1174932 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 1542915 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 2718863 27556415 ~ 27557007 (+) True G80249
TU100109 other downstream 3031905 27869457 ~ 27874931 (+) False AMCG00010393

Expression Profile