RNA id: AMCG00010345


Basic Information

Item Value
RNA id AMCG00010345
length 1487
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00010345
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 25580428 ~ 25590886 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATACCCAGGTTGATAGTGTGGAATGGATGAAAACCAGTGGGTTGTGAATGCTATACAGGATGATGATTCTTTCATAGAAGGCATCAGCAACCAGGTTCTTGCTGTGGTTGTCCTCAGCATTACATTTCTGGGTGGACTTGCTACTCTGCTGTATAGGAATGAGCAACAGAATATCCACCCAGAAAACCAGGAACGTGTGAGAGCCGTTCGTCAACAGATTCAGTCAGAACAGGATGCACCTGCAGAAGCGCGGCACCAGTTCTACACAGACATGTCCTGTCCAGTCTGTTTACAGCAAGCCTCGCTGCCTGTGGAGACCAACTGTGGTCACCTTTTCTGTGGGTCCTGCATTATTGCGTACTGGAGATATGGGTCATGGCTGGGAGCTATCAATTGTCCCATCTGTAGACAAATGGTGACTTTGCTGTTCCCATTATTTCAAGAACATGATCAGCCGTCCCAGACCCAGGAGGGCCAGCCTGAGGCGAGGCAGATACTCCAGGAAGTCAATGACTACAACAGGAGGTTCTCTGGGCAGCCCAGATCTTTGATGGACCGCATCCGAGACGTCCCCACCCTCCTGCGCCACGCCTTCAGGGAGATGTTCTCAGTAGGCGGACTTTTCTGGATGTTTCGAATCCGGATCCTGCTCTGCCTGGTTGGTGCTTTGACTTACCTTGTTTCTCCTCTGGACTTCATTCCCGAGGCTCTCTTTGGCATCCTGGGCTTCATGGACGATCTCTTTGTCATACTGTTGCTCTTCATTTACATCGCCATCATGTACAGAGAAGTGGTCACCCAGAGACTGGCCGGCTAAAGGCCACCCGTGACGCTGAAGTCGTCCGCATCCTTatgcaatacaaatgaaaatcgTAACGAAAAGGTGAATTCCACCGTGCTTAACTCCCATCAGCCATCGATTTAACTGTCTCGTCTGAATCCTTGAAGCCTACATAATGCCATCACAGCAGTTAAAGTAGCCACACTAAAGCAGGAGGAAAACGAGGAGGGAGGGTTTGCTTTCATACGTTTCGAAGTCATGGTACAGTCGCTCCAGGCTGTTTAGTTCTTCCAGCCTATTTTACTGTAGACACTTCAGCTTCAGTGGAGCTACAACTTAAATAGATATTTCCCTATGACTGCCTTATTCccctattttttctttcatatttataattctGGTGGAAATTATCATATAAGCAATGATGAGAAGCAGCTGAATATCAGCAGCCCTGCTTTTTGTCATATAGGTGCATGGCCTGGTTGGGATCAAGGGGGCTGCTGTAATCGCTTGTCTGTTTGAAAGCAGCCTCTAGGCGGTTTACAGGTCTGAAGAACAACTAAAACAGGAAGGTCAAAAGAACAGACACCTACATAGGATGACCCAGCAAACATCATAGGAACATTTTTAcaaagaaatatatgtaaagcCTGATATCATTCTTTATATGCAGACGCTTATTGAACATAAACcattgtgcatgtg

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15707 RNF170; E3 ubiquitin-protein ligase RNF170

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99677 lncRNA upstream 581931 24998294 ~ 24998497 (+) True G79924
TU99600 lncRNA upstream 743040 24833109 ~ 24837388 (+) False AMCG00010333
TU99583 lncRNA upstream 852671 24723834 ~ 24727757 (+) True G79849
TU99580 lncRNA upstream 929796 24601132 ~ 24650632 (+) True G79846
TU99555 lncRNA upstream 1278559 24300299 ~ 24301869 (+) True G79829
TU99820 lncRNA downstream 536197 26127083 ~ 26127308 (+) True G80032
TU99958 lncRNA downstream 782766 26373652 ~ 26375356 (+) True G80138
TU99960 lncRNA downstream 813720 26404606 ~ 26409613 (+) True G80140
TU99991 lncRNA downstream 906883 26497769 ~ 26502274 (+) True G80163
TU100040 lncRNA downstream 1324848 26915734 ~ 26916135 (+) True G80207
AMCG00010344 mRNA upstream 134944 25445072 ~ 25445484 (+) True AMCG00010344
AMCG00010338 mRNA upstream 683969 24851787 ~ 24896459 (+) True AMCG00010338
AMCG00010333 mRNA upstream 742876 24833071 ~ 24837552 (+) False AMCG00010333
AMCG00010332 mRNA upstream 762262 24804140 ~ 24818166 (+) True AMCG00010332
AMCG00010331 mRNA upstream 863053 24713647 ~ 24717375 (+) True AMCG00010331
AMCG00010346 mRNA downstream 190509 25781395 ~ 25782444 (+) True AMCG00010346
AMCG00010347 mRNA downstream 238313 25829199 ~ 25833535 (+) True AMCG00010347
AMCG00010367 mRNA downstream 263292 25854178 ~ 25879195 (+) True AMCG00010367
AMCG00010360 mRNA downstream 289729 25880615 ~ 25890608 (+) True AMCG00010360
AMCG00010356 mRNA downstream 338325 25929211 ~ 25934598 (+) True AMCG00010356
TU99599 other upstream 743040 24833109 ~ 24837388 (+) True AMCG00010333
TU99126 other upstream 2877019 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 2877054 22699742 ~ 22703374 (+) True G79475
TU99036 other upstream 3201619 22357969 ~ 22378809 (+) False G79420
TU99797 other downstream 401672 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 421598 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 789581 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 1965529 27556415 ~ 27557007 (+) True G80249
TU100109 other downstream 2278571 27869457 ~ 27874931 (+) False AMCG00010393

Expression Profile