RNA id: AMCG00010353


Basic Information

Item Value
RNA id AMCG00010353
length 2253
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00010353
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 26341343 ~ 26349330 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGTGAGGCCCGACACCATGGAGGACTGCTTGCATACATCTTCTGAGAACCTATCCAAGCTGGTGAGCTGGGCCCATAGCCATGGAACCATATGTAACCTCATCCCCAATCTCAAGCACTTACTTTCGGAGGGTTCCCATGGCAACCTGACAGCCATGTGGGGTTGCAGCGCCGGCCATGCTTATCACTGGCCCTTGACCGCCACCTGCCTGGCCGGGTCTCAAGAGCGTATGTGCTACCAGGACAGCCGCAGCTTCAACTCGGACAGCCCCAGCATCCTGGGAGCGGCCTCAGAAACACAGCCCAGCCCTGGAGACAGGTTTGTGGGGAGAGTGTCCAAAGGCAAGACAGACTGTGACCACTCCTACTGCAGTGAGCCCTCAGAAGCAGATGACAACACTGAGGACTATGAAGGTGACAGTGCTCTGTTTGACATGGTGTGCGAATCCTCCGTCACGGACGAAGACAGCGACTTTGAGCCCCAGCCGCACAGGCCACACCCCACTCTTAGAAAGAGACTGAATCCTGGGCTGCTGCCGGGAAAGTTGACTCCTTCATGCCAGACTTTGGAGGACAGAGCTGGTGACATGATGGTGAAGAAAATCAAGCAGGAGATACCCGAGGACTATTACATTGTGGCCAATGCCCAACTCACTGGGGGCATTGATGGCCCGGCTTTGTCGATAACCCAGTCGCCAAAGCACAAGTCCCAAACTCAAACTCCTGGACCATCACCTTCACACACAGTGCCTGTAAAGCCAGCTGCCCTGGCCTCTACCTCCGTCACTGTGGATGTAAACGCAGTGGGggtgtctgtctctccccaaAGCAGCGGGAGCAGCAACGGCAACCCCCGGGCCCCAACTGCCAAGCCACTCTGTGCCACTGCCTCAGCTGGCCATGGCAGGTTAATGATAAATGTTCACCCACCCCGACAACCTGTTGCTGTCCAAATGCCTGCCAGCACTTCCAATGCCAACCAGCACATCAACATCCCCCTGTCTGCCCTCCAGCTCCCAGGCCAGGACGAGCACATGGAGCAACTCCCCGGCGACGACATGGTGAAGCCCTCTGCCAAACCAGTGACCGCGATTGAGGTGGATCTCTCTCCTGCTGCCATTAACCCGGAGCTGGAGGTTAGCTCCAGTCAGCAGCAAGGCAACATGTCTCAGGCCTTCAGCGCAGAATCCAAAATGGAAGCAGCAGAGCTAGATGAAAGGCAAGCCGAAGCTAACAGAGAACAGAATGAGAAGACAATCCGGAGCACTCAGACGGCACTCAGAAACTTCCGCGAGTTCCTCATATCCAAATACCCCTCAGAAACCCGCGAAATTTACACAATCCCCTGTAATGAGCTGGATGCCTACCTGGCTTCCTTCTTTGTTGACGCCAGACAAAAGGATGGCTCGGAATATGAACCCAACAGTCTGGCCAATTATCAGTGCGGCCTGGAGCGGTACCTCAAAGAACATCGCTACAGCTACAGCATCACCAGGGATAAAGAGTTCAAACGCTCCCAGGAGGCCCTTAAACAGAAGCAGCTTGAGCTCAAATTCAAAGGGAAGGGAAACAAGCCCCACAAGTCCATGAAGCTCACCTTCGCCGATGAGCTGATCCTAAGAAAGAGGGGTCTCCTTAGCCGATTCAACCCCGAGGGGCTGCTCAACCTAGTGTGGCTGAACAACACCAAGGCCTTCGGACACTGCACGGGCTTCCACGGATCCACACTGAAGTGGGGAGACATAAGACTGCGTTCCACAGAGACAGGCTTAGAGTGCCTGGAGTGGACCTACCAGGAGTCAACGGACACCAACAACAAGACGAAGAGGGCCGGGACTGAGTGCCGGATCTATGCCACGCCCCACGCGCCCCAAACCTGTCCTGTTCAAGACTACAAGGAATACGCCCAAAGGAGGCCCCCCGCCATGCGCTACGAGGACGCCCCTTTCTATCTGTCCATTAAGCCAGTGGTCAACCTGGCTGCTCTGCACTGGTACAACTGCCAAGCACTGGGCAAGAACAAGCTGGCCAAGATGGTGAAGACCATGTGCGAGAAGGGCAACATCCCAGGCAGGAAGACCAACTTCAGTGTCTACCAGAGCTGCAGCACTCTCTCCGAGGCGCAGAGCAATCAGCTGGTGCTCATCTGCAACAACCTCAGCCAGCAGGCCGCTCAGTCTATGAGCTCCCATGCCAGTGGTACTAACTTTGTGATCGCTGGCTCCTTTGACTCCTCCTCAGACACCACGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99820 lncRNA upstream 214035 26127083 ~ 26127308 (+) True G80032
TU99709 lncRNA upstream 758768 25582318 ~ 25582575 (+) True G79952
TU99677 lncRNA upstream 1342846 24998294 ~ 24998497 (+) True G79924
TU99600 lncRNA upstream 1503955 24833109 ~ 24837388 (+) False AMCG00010333
TU99583 lncRNA upstream 1613586 24723834 ~ 24727757 (+) True G79849
TU99958 lncRNA downstream 24322 26373652 ~ 26375356 (+) True G80138
TU99960 lncRNA downstream 55276 26404606 ~ 26409613 (+) True G80140
TU99991 lncRNA downstream 148439 26497769 ~ 26502274 (+) True G80163
TU100040 lncRNA downstream 566404 26915734 ~ 26916135 (+) True G80207
TU100041 lncRNA downstream 567211 26916541 ~ 26916839 (+) True G80208
AMCG00010357 mRNA upstream 12675 26306640 ~ 26328668 (+) True AMCG00010357
AMCG00010361 mRNA upstream 179412 26146725 ~ 26161931 (+) True AMCG00010361
AMCG00010354 mRNA upstream 260859 26069182 ~ 26080484 (+) True AMCG00010354
AMCG00010355 mRNA upstream 278450 26059148 ~ 26062893 (+) True AMCG00010355
AMCG00010362 mRNA upstream 284238 26042341 ~ 26057105 (+) True AMCG00010362
AMCG00010368 mRNA downstream 13909 26363239 ~ 26365061 (+) True AMCG00010368
AMCG00010369 mRNA downstream 31252 26380582 ~ 26403020 (+) True AMCG00010369
AMCG00010372 mRNA downstream 273019 26622349 ~ 26638228 (+) True AMCG00010372
AMCG00010377 mRNA downstream 385967 26735297 ~ 26735518 (+) True AMCG00010377
AMCG00010374 mRNA downstream 398238 26747568 ~ 26751936 (+) True AMCG00010374
TU99785 other upstream 315040 26012484 ~ 26026303 (+) True G80014
TU99797 other upstream 344929 25992558 ~ 25996414 (+) True AMCG00010366
TU99599 other upstream 1503955 24833109 ~ 24837388 (+) True AMCG00010333
TU99126 other upstream 3637934 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 3637969 22699742 ~ 22703374 (+) True G79475
TU99961 other downstream 31137 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 1207085 27556415 ~ 27557007 (+) True G80249
TU100109 other downstream 1520127 27869457 ~ 27874931 (+) False AMCG00010393
TU100171 other downstream 1557167 27906497 ~ 27906829 (+) True G80326
TU100533 other downstream 3145287 29494617 ~ 29503451 (+) False AMCG00010431

Expression Profile