RNA id: AMCG00010360


Basic Information

Item Value
RNA id AMCG00010360
length 3378
RNA type mRNA
GC content 0.46
exon number 14
gene id AMCG00010360
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 25880615 ~ 25890608 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAACAGCTCAACCGAGATGGTCCTGGTATATCTATTGCAACAAATCATTTGATTTTTCATTACAGCTATAAACTTAAACTAATCTGTTGATGCTGCGTTCAGCGGGTTATTTCGAAAAGATACCCTGCCCCTATTTCCTGAGGGGCTGCTGCGAGCGGCCTTTCTGCCATTACAGACACCAGCAGGCGGAGACGCTGTTTGCGGCGCCGAGCGGCTCTCGGGCTGCGGAAAATGGAAAAGATCCCCTCACCCGTTTCAAGGCGTATTCCAGCACCCTTAGCAAGCCGGCCGCATTGTCTGAAAAAGATCCCAGTGTTATGGAATTGGAAAGGATAAACAAAGCGATAGAGACGGTCAAATGTGAGGTTGAGAAAGAGCAAAAGCGACTGACCCATTATAAGAACCTTCAAGGAAAGGTCAGCTCTAGTGGTTCATGTCCCGATAGTGTTGCACCTTTGACCATTGAAGAtcacagcagaaataaaatccAAAATGCTAGTGCTACTCGCAAATTCCCTTCCTCCTACTCTGGCAATAGTAAATATGTGGTGGATAAATCCAAGCCAAGAACAGATTTAGAATATGACCCTTTGTCCAACTATTCTGCTGACTTGAGGAACCCCAAATCACAGCAGTGTGAAGGCCATGAGAAGAGGGGCATCAAAAGGACCAAGGAAGAGGTCTCTGTAGGCACAACTGAACGACTAAATAAAGAGATTGAGATGCAAGAGTCAGATGATGATGGTATCCTTGTTATTGACATTCCACCACTGGAAAATGATGGGAAAAGGACGAGATCCTCAAAGAGGTGCAAGAGTAATGTCAACCAAACTGAAAAGTTAACAGAAGCTGCTGAAGATGGGGATGTTCTGGCCAAAACcctaattcaaaatgttttggatCCTGTTCTGCAATATGAGCCAAATGTGTCATTGATCACTAAAGCAGAGAGACCAAAGGGTCTGGAATACAAAAACTCCTTCTCGGCTACAGATGGAAAGTTTGGGAATGAAGTCAAAAGCTCAAGCCTGGCATTTACATCTACAAGAACATCCACACGTTTAGAAAAATCCAACAGTGAAACAAAAGCCACTGGTGCCCTACGGAAACAAGCTGAACATCACATACCGAGCAGCAGCTCTGTCTCGGATTGTTCCAAAGCTAATTTGAAATCCACAAGAGAACTTGAGGGCTCGTCCTGTGCTGCCACAAAAAGTCAAAGAAAACCTGAGTGGGACTTGATGATCAAGGGGGTGGACCCATCAAAGAGTGAGCAGAGAGATGGCTATAAGGAAGGAATCCACTGTTTGCCAATACAACCAAAGCCACCTTCACTTACACCAAATCCAGTGCTGCAGTTAAAGGGAAGTGACCGTGGTGGGATCAGCCCATCACTTAAAACAAAGACTGAAGATCAGAGTAAAGTTCAGCAGACCTCTGACTCTAATAACAAAACTTACTGCCCACCCCTGCAACAGAAGTCAACTGTGCCAAGCATCCAGAAAGGGCAGTCCGAAGCAGAAGAATTTAATTTTGATGGCATTAACTTCCTTTTGCCCACTGAAAATCTAAAGTTTGACCAGGAAGATCTTACAAAGGACTCCACTGGTCTTCAGTTGCAGCAAGAGTTGCTTCAGTCTTGTATTCCACAGTTGGCAACAACAGAATTGGAATACAGCTCCTGCAGCCTGAATCCCTCTCCTGTGCTGCCAGAAAATGATGAAAACGCCGCAATCGATCTAGCCTCTGAAGCAGAGACTGGTTATTCAGACCTAGATACGGACTTGTCCGATAGTGACACAATGGAGGAATGTTACCGTATATTTATGGAAGCCAACGAGCCCAAACCAGAAACTCAAGAAAAGAGCAACGCAGCAGTGAATAAAAACCGGCAGCAGGTAGTTATTCCATTCAGAGGGCCGACTGTCCAGCTGCCTAATCTTTCTAGAATTCATCAGTTGCAGCAGCAGGCCTCAGTCTTGACCGCAGCTGTCAAAGGGGGGCAGGCTTTTGTAGCTGCAACTACGGGGCAAAAGAAGCCAATTATAGTAGCCACCTCCACACCTCTTCCCAGTCCTGTGCAAACTGTTGCAATGACCGTGCCATGGACCATCATCGTTCCAGAGGGGAGCATAGCCAGTCTGCCCATAACTCACATTCCAACCCCTGTTGCACCACAGCGCGTTACTTACACTCCTTCCAAGGCAATTTCCACTAGAAGAAAACCAAAGGTCCCTGCCGAGTCCAGCTCCAAAGTCCCACACGATGTACGACAACGCTACGTCAACCAGTTTGTTGAAGAATTCCTGAAAACCTCATTCACCGTGGAAGAGGCTTTTGAAAAGGCCCTGGCTGAAGAAAAGGCCGTATTTGACCGTAGTACCAACAAATTGAAGTACCTGAGTATAGCTGTGAACTCCCTCAAGCGGCTAAAGAACCAAACCAACCCTTCTGTGAAATATGCAGCCAGTGTGGCGCTGTACGAGCAGCTGAAGGAATATGTTCTGTCTGAGGAGATGTTAAAAGCGAACAACTATCCTCTTCAGCACCCTGACAAACCCAGTGCTGCTGTATTGTATGGTGAAATCTCCAAGAGGAGCAGCACTGACTCTTCAAAGAGAATATGCTGTCGGTGTGGAGCAACTTACTCTGTAAGCTTGTCTGGGAAACATGTTCGAAAGGAGGAGTGCAATTACCACTGTGGGAAAGTCCTGAAGAAAAAGGTGCCTGGTGGGATGGACACACGCTATAGCTGCTGTGAGGGCGCGGTGGGGACTCCTGGATGTCAGGTCTTCAAACTCCATGTACACGATGGTGTTAAAGATAACCTTGAAGGTTTTGTAAAGACTTTTCAGAAGCCCATCCCTGTCAATGGAAGCCCTGGTGTATTTGCACTGGACTGTGAAATGtgcTATACAACTCAAGGTCTTGAGTTAGCCAGGGTTACAGTGGTTAACTCCAGTCTGCAGGTCATCTATGACACCTTTGTTAAACCCGACAATGAAGTAATTGACTATAACACCAGATTTTCCGGGGTGACTGAAGAAGACTTGCAGACCACCACCACCTCAATCCGTGATGTTCAGGCTGTGTTGCTGAACCTCTTCAGCGCAGACACAATATTGATTGGGCATGGCTTTGAAAATGACCTTTGTGCACTTAAGCTACTTCACGGTACTGTGGTTGACACCGCCATGGTATTTCCTCATCGTCTGGGTTTACCACACAAGAGAGCACTTAGAAGCTTAACAGCAGACTACCTTAGGAGAATTATTCAAGAAAGTGTTGATGGTCACGACTCCAGTGAAGATGCTTCAGCATGTATGGAACTGATGCTGTGGAAAATAAAGGAAGATGGAAAAGTGAAAAGAtggtga

Function

GO: NA

KEGG:

id description
K14570 REX1, REXO1, RNH70; RNA exonuclease 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99709 lncRNA upstream 298040 25582318 ~ 25582575 (+) True G79952
TU99677 lncRNA upstream 882118 24998294 ~ 24998497 (+) True G79924
TU99600 lncRNA upstream 1043227 24833109 ~ 24837388 (+) False AMCG00010333
TU99583 lncRNA upstream 1152858 24723834 ~ 24727757 (+) True G79849
TU99580 lncRNA upstream 1229983 24601132 ~ 24650632 (+) True G79846
TU99820 lncRNA downstream 236475 26127083 ~ 26127308 (+) True G80032
TU99958 lncRNA downstream 483044 26373652 ~ 26375356 (+) True G80138
TU99960 lncRNA downstream 513998 26404606 ~ 26409613 (+) True G80140
TU99991 lncRNA downstream 607161 26497769 ~ 26502274 (+) True G80163
TU100040 lncRNA downstream 1025126 26915734 ~ 26916135 (+) True G80207
AMCG00010367 mRNA upstream 1420 25854178 ~ 25879195 (+) True AMCG00010367
AMCG00010347 mRNA upstream 47080 25829199 ~ 25833535 (+) True AMCG00010347
AMCG00010346 mRNA upstream 98171 25781395 ~ 25782444 (+) True AMCG00010346
AMCG00010345 mRNA upstream 289729 25580428 ~ 25590886 (+) True AMCG00010345
AMCG00010344 mRNA upstream 435131 25445072 ~ 25445484 (+) True AMCG00010344
AMCG00010356 mRNA downstream 38603 25929211 ~ 25934598 (+) True AMCG00010356
AMCG00010359 mRNA downstream 65146 25955754 ~ 25974860 (+) True AMCG00010359
AMCG00010358 mRNA downstream 86088 25976696 ~ 25985497 (+) True AMCG00010358
AMCG00010366 mRNA downstream 104213 25994821 ~ 25995156 (+) False AMCG00010366
AMCG00010365 mRNA downstream 113327 26003935 ~ 26012974 (+) True AMCG00010365
TU99599 other upstream 1043227 24833109 ~ 24837388 (+) True AMCG00010333
TU99126 other upstream 3177206 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 3177241 22699742 ~ 22703374 (+) True G79475
TU99036 other upstream 3501806 22357969 ~ 22378809 (+) False G79420
TU99797 other downstream 101950 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 121876 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 489859 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 1665807 27556415 ~ 27557007 (+) True G80249
TU100109 other downstream 1978849 27869457 ~ 27874931 (+) False AMCG00010393

Expression Profile