RNA id: TU99797


Basic Information

Item Value
RNA id TU99797
length 1830
RNA type TUCP
GC content 0.43
exon number 2
gene id AMCG00010366
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 25992558 ~ 25996414 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGACTGACGTGCTATAAATTGTGAGGGACAAACCCTACTCCCCACAGCCCCCCCTCCGCCTCTCCCCTACAGTTAGCCTGTCAGAGAGCTTGAATGTGATCAGAGAGCATGAGGATCTGTCTCTAATAGGAGCTACGGGGCTGCAGGGAGTAGACTGCCTAATGACCGGACCAAGAACCATCTGTAAAGAAAGAATTTCTGCTCCACTCTTGGCACTTACAGACCTGTACCACCATGACCAGGAAGGTATTTACCAACACCCGGGAGAGGTGGAGACAGCAGAATGTCAACAGTGCTTTCGCTGAGCTGCGGAAGCTCATCCCCACTCACCCCCCGGAGAAGAAGCTGAGCAAGAATGAGATCCTGCGGCTGGCTATGAAATACATCAACTTTCTGGTGCAGCTGCTGGACAGCCAGAGCGGGCAGTCGGCCGCCCACTCCCCCAGCTCCCTTCTGCACTTCCTGAGGGGCAATGTGGAGCGCCTGAACTCCGCCAAGCAGTGGGGGCTCATCAGCGACACAGAGGCCCCGTCCCCGGGTTCCAGCTGCGACAGCTCGGAGTCCTGGTAGCTTTCTCCATGGCctaaagaaacagagaaaaaagaaacaggactGATGTGTGACTGGAAGCCTGGGACCTAAAAGTGGCTGATTTTTCACTGTTGTTTTGTTACAGCGTACTGTGCTTCTGCAACACATCGGACCCATCCAAGCCAGGCGAtggttaatcttttttttttttttggtgtgcatCTTAGGTGATCCTACCGTTTCCAGTTTGGCAACCCTAGCTGGGGTAGCTTAATGTCCGTCGTCTAGCTATAATGTAGGAAAACTGACAAAAGGCCCAGCAGTGGCACCAGGAAAGCCTGATGGGAAACTCTTCATGTTGATGGCGCTGTCACACTAGTTATCTGCATGGATGTTACTTGGGTGTCTTCCcccattatttattgttttcaatgttatcCCTCTGGTTcgggatgtttttttaaaatataaataaataaatatatatatatattaattatttaagatCTTCATCAGAACTACCCTTTGATAAATATATTCGTTTAAACTTTTTATCTAACTGACAGCATAACAATTTACCACATCTAAAGGCATATTATGATGGCTTGTTCACAATGAAAGCACTTGTGCTGACATCTCATGCAGAATTCCTAAAATGGAAATattcaaacacagaaacactgaaGCATCCAAACATTGGAGTCAGGCAAGGGTATTAAGTCATACTTGGGGACAGAAATGATCCGTGTCGCCATTGTGACattccaaattaataataaaaggccATGTTGTTTATTGATATCATATTCTGTACTAACGTAATGATGAAAACCTGTTGTGTTCTATAATGTTATAATCATTTCTATATCACTGTGTTTTCAAAAGGTTTATAGTATAATTGTGTGGGTGCCTGTGGACAGTACAGCCAGTGGAAATGGCAATTCTAAAAATGATATGCTTCTGGACAAGGAAGGTCAAAGATTGTTTAATAGATGGCATTCTTGGAAGAAATTACAGCAAATTGGGGGGAGAGACAAAAAAATTGCAGAGACGTTTTGCTtactgaaaaactaaattaatttgcCGTTTTGTATGACAAAATACATCACCTTAGCCAAAGAATATTATTTGACCAATCCGTCACAGGGGCGTTGTGACACCGTGTATGACAATGcccttgcttttgttttctctaaagcgttttttctttgtggtaatttattatttattgtgatttatttatttatgtatttatttaatctgtaatgtGGTTAATAAAAGTATGTTGTGACAATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99709 lncRNA upstream 409983 25582318 ~ 25582575 (+) True G79952
TU99677 lncRNA upstream 994061 24998294 ~ 24998497 (+) True G79924
TU99600 lncRNA upstream 1155170 24833109 ~ 24837388 (+) False AMCG00010333
TU99583 lncRNA upstream 1264801 24723834 ~ 24727757 (+) True G79849
TU99580 lncRNA upstream 1341926 24601132 ~ 24650632 (+) True G79846
TU99820 lncRNA downstream 130669 26127083 ~ 26127308 (+) True G80032
TU99958 lncRNA downstream 377238 26373652 ~ 26375356 (+) True G80138
TU99960 lncRNA downstream 408192 26404606 ~ 26409613 (+) True G80140
TU99991 lncRNA downstream 501355 26497769 ~ 26502274 (+) True G80163
TU100040 lncRNA downstream 919320 26915734 ~ 26916135 (+) True G80207
AMCG00010358 mRNA upstream 7061 25976696 ~ 25985497 (+) True AMCG00010358
AMCG00010359 mRNA upstream 17698 25955754 ~ 25974860 (+) True AMCG00010359
AMCG00010356 mRNA upstream 57960 25929211 ~ 25934598 (+) True AMCG00010356
AMCG00010360 mRNA upstream 101950 25880615 ~ 25890608 (+) True AMCG00010360
AMCG00010367 mRNA upstream 113363 25854178 ~ 25879195 (+) True AMCG00010367
AMCG00010365 mRNA downstream 7521 26003935 ~ 26012974 (+) True AMCG00010365
AMCG00010362 mRNA downstream 45927 26042341 ~ 26057105 (+) True AMCG00010362
AMCG00010355 mRNA downstream 62734 26059148 ~ 26062893 (+) True AMCG00010355
AMCG00010354 mRNA downstream 72768 26069182 ~ 26080484 (+) True AMCG00010354
AMCG00010361 mRNA downstream 150311 26146725 ~ 26161931 (+) True AMCG00010361
TU99599 other upstream 1155170 24833109 ~ 24837388 (+) True AMCG00010333
TU99126 other upstream 3289149 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 3289184 22699742 ~ 22703374 (+) True G79475
TU99036 other upstream 3613749 22357969 ~ 22378809 (+) False G79420
TU99038 other upstream 3613749 22357969 ~ 22378809 (+) False G79420
TU99785 other downstream 16070 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 384053 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 1560001 27556415 ~ 27557007 (+) True G80249
TU100109 other downstream 1873043 27869457 ~ 27874931 (+) False AMCG00010393
TU100171 other downstream 1910083 27906497 ~ 27906829 (+) True G80326

Expression Profile