RNA id: AMCG00010372


Basic Information

Item Value
RNA id AMCG00010372
length 2757
RNA type mRNA
GC content 0.39
exon number 5
gene id AMCG00010372
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 26622349 ~ 26638228 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAAATGAACGATTTGTCGACCTTCAATTGTCAAGCGGGGAAAGGGGATGGtgactgggggttGGAGTCCAATGAACTAAGGCGGTACTGCAGTGCTTTTGGGTATGGCTGGGACTATCCTGACTCTACTTTTAGAGACATCCCATTCTGTTACCCGGAGTTTCTCTTCCTCCGCTTGCTGACAATGATTGTGTGTGCTGAGAGCTTCAGGTTAAGCCCTCTGGGACTTGTCCGTGTGCGTCAAACGATGATAACATTCCAGCCAATAGATGAACTGAAGAAAGGTCCCTTTTCCCTTCAGGCATCTGTGAGAGAATACAGAGCTGTGGACTTGGGAATAGAAGTGGACATTGGCCTTGCTGTAGCAGATAGATCCAACAAGcctgtgtgggaagagcttGTGACATTACTCTCCAGAgatatgaagaaaataacaagcaaaCGGCAACATGCCCAAGGGAGCACTGACCCAAACGAAGTGAAATCAGTGGAAGTTGTCatcccatggaacacaggactgaaaTATGCTCAAGCTACTAGGGACTATAATCCACTTCATCTCTTCCCAGCCACTGCTAAACTCCTTGGATGCAAACGAACCATAGCTTATCCCTTGTGGACGGTATCCAAATGCCTTGCTGAAATAGAGAAACATGAAGgaACTGATGCTGTCAGAGCCCCTGCCAGTGTGCGAGTGGAGTTTCACCAACCGTTGTTCATGCCTGGGAAAGCTGTCATCAAGTTCTGGGAAAATGCCCCTGAGGGAAGCACTTCATCTCACAAACTCTACCACTTCAGAATGGGAGAGAGTGAGGACAGCACCCCTCATCTTGTGGGTGAAATATGTGTAGGGGAACAGTAGCTTAGAGGACAATtgcatgaaatactgaaatggaTTAAAGACATATGTAGAGGCAATGTATCTAAGACATGAAACACCTATTTTCATGACATCAAGCACCTTAATGTGTAATCAATGACTTCAAGTTGGCAAACTTGCCTAACATGACAACTGGGAATGGacttttatatgtgtgtgtattttaattgtaatagttttaatttacaagAGAAGTTCTGTATGTTTTTGGGTATATTTTTGCTTCTTTTCAGTGATTAGAAAGATTAGAAACTGCTGTTGGAATAACGGCTAAGAGAAATTACTGTTATTTGTCTTCCCACTAGCTAATCTTGTTGTTTGATTCTTAAGCCTCTTCTATAGCAACAAATCGTGTTGGTACTGAAACCAATCTATTTATCCATTTTctttgaacaaaaatataaaaagtgtgGCCTGGTGGTGTAGTtattagtgctgctgcctcacagctcctgggagCCAGGTTTGATTCCAGCCTTGAGTGCCTGCCAGTGTAGAGTTTGCATATTTTCCACGTGCGTTTTTGCCGGGTTCTCTATGGTTTCTTCCCACTTCCAAAACATATGttgcttaggttgattggctactccAAACTGCCCTGTCATCATGTGATTGTTTGTGGGGGGTGTTGCTTCCCTGGGCTGGACTGGCCATGCGCTCTGTTAGGGTCTGGCTCACTGTGACCTTGTAGTTGATGAAGTGGGTATTGAAAATGGAGGGATGGTTGGTAGAGTATCAAAATGTAGTATCAAATGAAGAACTGGTTAAAACCACTGAGCAAACCTAGGAGAGAAGAAAGATAGTGCTTTTGAAAAAAACTTTCCAAAAAGCAGTTCCCAAACTAGGACTGTGCCAGCATACCACATTTGAATCGATGGCCCCTCTGCTTCAGAATTGTTGTGCTTTTAATGACTTTCCcggcttttaaaacatttcaatttcagttttaatctctttctttctcaaaaAGAGCAGTGTTCTGATCCCTTGCAgaatattttagtaatttaaggTGAATGACTTGGGAATTCTAGCTAGTTTATTTTACTGACAACATCTGAGTGCTCTGCCCAGATTTCTCATCTCGGAGTACAATTAATTTTACCTATCCTTCAGCTTAGTTCACCAGTTTATTTCAAACCTAAAATGACTGCTTTAAATTAACAGACTGGAAAGGAAAATTAAAggatggattaaatcaaaactctcTCACCCACTTATAGCAAATTACAAAGTGGAAAACTGATATGTTCCATACATTTGAACACAAAATACTCCTGTTGAAACTACAATGTGCAGATGGATATGGCAGTGTAGTAaaggtcaaaataaaatactttcatttaacatagacaaatacaaaacatccaTAAAAGAATTTTAGCGATTCCAATTCCGATTTCGATTCTTATGGATTCCCAGTTTCGATTCCaatgtagtaaaaaaaaaaatgaagtacaaCGTTTTGatatcaaacacatttattctgtgtcttattttacaaaacatttagttGCAGCTGAATACCatgaacaaaaatcagcaggctACATACAAACTAAGGACTCCTTTAAGAGCTATATGTGtacaaaactgttaaattaacactttaacaattaacaattgacaattcgaactacctacaagtGCCAAAACCGGTCTTTGTAACCGATAGCTGTTTAACAGTtgtgatatgataatcaaaggcaaactaTGGCATAAAACtcatatgttttattcatgaacatcaaatccaacatttgtATAGCACAAatggattatttaaatatgattattgatatatgatcataaaacataaatattattgctatgaataacaaagcacttttttttctaaacgtgcacactgcagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99991 lncRNA upstream 120075 26497769 ~ 26502274 (+) True G80163
TU99960 lncRNA upstream 212736 26404606 ~ 26409613 (+) True G80140
TU99958 lncRNA upstream 246993 26373652 ~ 26375356 (+) True G80138
TU99820 lncRNA upstream 495041 26127083 ~ 26127308 (+) True G80032
TU99709 lncRNA upstream 1039774 25582318 ~ 25582575 (+) True G79952
TU100040 lncRNA downstream 277506 26915734 ~ 26916135 (+) True G80207
TU100041 lncRNA downstream 278313 26916541 ~ 26916839 (+) True G80208
TU100043 lncRNA downstream 440061 27078289 ~ 27078504 (+) True G80210
TU100050 lncRNA downstream 564773 27203001 ~ 27203201 (+) True G80217
TU100068 lncRNA downstream 650351 27288579 ~ 27288856 (+) True G80235
AMCG00010369 mRNA upstream 219329 26380582 ~ 26403020 (+) True AMCG00010369
AMCG00010368 mRNA upstream 257288 26363239 ~ 26365061 (+) True AMCG00010368
AMCG00010353 mRNA upstream 273019 26341343 ~ 26349330 (+) True AMCG00010353
AMCG00010357 mRNA upstream 293681 26306640 ~ 26328668 (+) True AMCG00010357
AMCG00010361 mRNA upstream 460418 26146725 ~ 26161931 (+) True AMCG00010361
AMCG00010377 mRNA downstream 97069 26735297 ~ 26735518 (+) True AMCG00010377
AMCG00010374 mRNA downstream 109340 26747568 ~ 26751936 (+) True AMCG00010374
AMCG00010378 mRNA downstream 279669 26917897 ~ 26921875 (+) True AMCG00010378
AMCG00010380 mRNA downstream 626557 27264785 ~ 27277753 (+) True AMCG00010380
AMCG00010382 mRNA downstream 822814 27461042 ~ 27466622 (+) True AMCG00010382
TU99961 other upstream 227827 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 596046 26012484 ~ 26026303 (+) True G80014
TU99797 other upstream 625935 25992558 ~ 25996414 (+) True AMCG00010366
TU99599 other upstream 1784961 24833109 ~ 24837388 (+) True AMCG00010333
TU99126 other upstream 3918940 22699809 ~ 22703409 (+) False G79475
TU100084 other downstream 918187 27556415 ~ 27557007 (+) True G80249
TU100109 other downstream 1231229 27869457 ~ 27874931 (+) False AMCG00010393
TU100171 other downstream 1268269 27906497 ~ 27906829 (+) True G80326
TU100533 other downstream 2856389 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 7265587 33903815 ~ 33935416 (+) False AMCG00010529

Expression Profile