RNA id: AMCG00010379



Basic Information


Item Value
RNA id AMCG00010379
length 1098
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00010379
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27525520 ~ 27548008 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cCTTCACCTATCAGCTTtgtaaagaaaggaaaaacagcaaAGAACAGCATCTCTGTGTCATGGCAGGAACCAGACCGCCCCAATGGCATCATTTTGGAATATGAgatcaaatattttgaaaagGATCAGGAGACAAGCTACACCATCATCAAGTCAAAGGAGACCGAGATCACGGCGGATGGTCTGAAGCCTGCCTCAGTGTATGTGTTTCAAATCCGAGCTCGGACCGCAGCCGGGTATGGAGATTTCAGTCGCAGGTTCGAGTTTGAAACCAGCCCCTATTTAGTAGCTGCATCCAGTGACCAGAGCCAGGTTCCAATCATAGCTGTCTCCATCACAGTGGGGGTGATCCTGCTGGCTGTGGTTACAGGATTCCTCCTCAGTGGAagACGGTGTGGCTATAGCAAGGCCAAGCAGGATCCCGAAGAAGAGAAGATGCATTTTCACAATGGGCATATAAAACTGCCTGGCATACGGACATACATTGACCCTCATACCTATGAAGATCCAAACCAAGCTGTTCACGAGTTTGCAAAGGAGATAGATGCGTCTTGCATTACAATTGAAAGAGTAATAGGAGCAGGTAAACCTGTGATGATAGTAACTGAATACATGGAAAATGGATCccttgatacatttttaaagGTGATCAAAGCTGTGGAAGAAGGTTATCGTTTGCCAGGGCCCATGGACTGCCCTGCCGCTCTGTACCAGCTGATGATGGATTGCTGGCAGAAAGACAGGAACAGCAGGCCTAAGTTTGAAGAAATAGTCAGCCTGTTGGACAAACTCATCCGCAATCCCAGCAGTTTGAAAAccttaataaatgcgtccaatAGGGTGTCAAACCTATTAGTGGAGCATGGTACTATGGAAACCAGTGTCTACCGATCAGTGGGAGAGTGGTTAGAGGCCATAAAAATGGGTCGATACACAGAACTTTTCATAGAAAGTGGATACACTTCAGTGGAAGCAGTGGCTCAGATGACCTTGGATGATCTGAGGAGGGTTGGCGTTAACCTTGCTGGTCATCAGAAAAAGATTATCAACAGCATTCAGGAAATGAGAGTCCAGATGATGAATGGCACAGTACCAGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU100068 lncRNA upstream 236664 27288579 ~ 27288856 (+) True G80235
TU100050 lncRNA upstream 322319 27203001 ~ 27203201 (+) True G80217
TU100043 lncRNA upstream 447016 27078289 ~ 27078504 (+) True G80210
TU100041 lncRNA upstream 608681 26916541 ~ 26916839 (+) True G80208
TU100040 lncRNA upstream 609385 26915734 ~ 26916135 (+) True G80207
TU100103 lncRNA downstream 247502 27795510 ~ 27796290 (+) True G80264
TU100177 lncRNA downstream 388158 27936166 ~ 27937054 (+) True G80331
TU100212 lncRNA downstream 473466 28021474 ~ 28021684 (+) True G80362
TU100254 lncRNA downstream 658313 28206321 ~ 28207268 (+) True G80392
TU100289 lncRNA downstream 713519 28261527 ~ 28262672 (+) False AMCG00010407
AMCG00010381 mRNA upstream 15687 27508855 ~ 27509833 (+) True AMCG00010381
AMCG00010382 mRNA upstream 58898 27461042 ~ 27466622 (+) True AMCG00010382
AMCG00010380 mRNA upstream 247767 27264785 ~ 27277753 (+) True AMCG00010380
AMCG00010378 mRNA upstream 603645 26917897 ~ 26921875 (+) True AMCG00010378
AMCG00010374 mRNA upstream 773584 26747568 ~ 26751936 (+) True AMCG00010374
AMCG00010385 mRNA downstream 162605 27710613 ~ 27723371 (+) True AMCG00010385
AMCG00010383 mRNA downstream 215572 27763580 ~ 27775353 (+) True AMCG00010383
AMCG00010390 mRNA downstream 238429 27786437 ~ 27795327 (+) True AMCG00010390
AMCG00010384 mRNA downstream 262400 27810408 ~ 27813573 (+) True AMCG00010384
AMCG00010395 mRNA downstream 303554 27851562 ~ 27867176 (+) True AMCG00010395
TU99961 other upstream 1130998 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 1499217 26012484 ~ 26026303 (+) True G80014
TU99797 other upstream 1529106 25992558 ~ 25996414 (+) True AMCG00010366
TU99599 other upstream 2688132 24833109 ~ 24837388 (+) True AMCG00010333
TU99126 other upstream 4822111 22699809 ~ 22703409 (+) False G79475
TU100084 other downstream 8407 27556415 ~ 27557007 (+) True G80249
TU100109 other downstream 321449 27869457 ~ 27874931 (+) False AMCG00010393
TU100171 other downstream 358489 27906497 ~ 27906829 (+) True G80326
TU100533 other downstream 1946609 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 6355807 33903815 ~ 33935416 (+) False AMCG00010529

Expression Profile