RNA id: AMCG00010380


Basic Information

Item Value
RNA id AMCG00010380
length 1864
RNA type mRNA
GC content 0.41
exon number 10
gene id AMCG00010380
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27264785 ~ 27277753 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacagatTTACAGTTGAACGACACTTTAATGGGATACAACATGGGCTGAACACGGATCGCTAAGAGTATAATAACCTCCGAGGACATCAGCACGGCTTTATTTGTCGGACTCGAGTGACTTACTAAACAGGAAGTAAATACTAAGACAAAAACAGCGGGCAAAACAAAGCCGTGTCAACATGGACAACAGACTCCCTCGCCTGGCCAGGGCACCTGCAAAGCTGCGGTACTTCACAAAAACTGATGGAAGTGCAAAACTCATTCCAAAGCCAGGAAGTGATATCATGAATGCTCTAGAGGACTTTTTTGATGAATCAGGAGCAAGTGATGGTAGTGTGCGAGGTTCTCCCATTCTTTTTGAGAATGAGGTGGTTACTCCTGAAAACAGTCCAACAAAAGTTGAATCAGCAGAGACTGTTTTATCTGCTGTGAAGCTACCAGTTGTAAAAAATGTTGTGACAAGtgtcaCTGAAAAAGAAACTCTGGCAAAAGATCCTCAGCAAGATGAAATGGACGAGGAATTCATGGTTGTGGAAGAGGAACATTTTAACTGGCGCACTTGGATTTCCATTCCAAAAAAGAAGCAAGAGACTTCAAATAAGCAACCCAAGCAGGATGAGAATGAGAAGGTCGAGAAGCCATCTGCAAATGTGGCTGCACCTTCAAAGACCAGTGTAACTTGGACAAAAGATGATCAGAACAGTTTAGATGCTGCTCCTGCtcgaaagaaaaagcaaccgaGACATAAACCAGAAAGCCAGAAAGAGCAGGCAAACAAGAGTCATTCCAACAAACGAGATGAAGCTAGGTCTGCTGGTGACAGTAAAGACTTTGAGAAGCAGGGAAAGATAAAAACAGCATCCAGAGCAAAGGATGCAGTGTCTCCTCACAGAGCGGTCCCCACTGATGCCTGTGGTGTAAAGGTACTGACTGTACCCAGAGTTTGTCCTGTGAGTGCAAGACACCTCTCTGGTGCTGGGCTGGATGATTCTGCAGAGGTGCAGATACCTGTTCCAAGTGATCTAGCAGCAGACTGGAATAAAGCACAGCCATCTGGCAATACCCAttacCAAGGTTATGAAAGTGGACCATCTTCAATAAGAACCATTACCTATGAAGATGATGGGCATTTTGACAATGACCAAGAGAACACCATATTAGGCGTCCCTTCATCGGGAAGAAAGTCCCGTCTTCAAGCCTCAAAGAATCCACAAAAGGAAGCCTGCCTAAATAAGgttttcaATATTCTGAATGGCTACGTCAATGTAAAAGTTGGCTTTGAAGAGCAGGATCTTTCCTCAGGAGATATTTTTTATGTCCCATCTGGGCAGATGTACAGTGTATGTAATCTGACTGAGGAACCAGCACTGTTTTTGTATACACAGCTACTATATTCCAACAACTGAGATCGTccatagaagaaaaataaatatgcaaagtTGAAAGCTTGCAAAAGTCATCAACAAATACCAGACATAAGTACACTGGTCAAGCCTATAGTTCACCATTCCCAATCTTGAGAAGTGTATTGCGGAGGTTTTGCCGTTAATGAAAAAGAGCAATTGTAAATATGATGCATAATATTGTTTCTGcttagtttaaataaaaggtAATATTAGACTTTTGTATGATATCTAAAATGTTtgcttgacctttttttttagAGTTTTCAGAGCAGAGAATCATAGTTTAAGGCTATCcatatttgtgaaaatgttttttcaaaaaaaaaaaaaagtgaatgtaaacAAATCTTTTACTTGTTTTTGCATTAAAGTTAAAAGTTCTTATTCAATTTGGTAATTCAGCCTTTTACAGATTATAACCACAAAAGGGCACTGACCTCTTTTCTTGGAGATTAGGG

Function

GO:

id name namespace
GO:0005694 chromosome cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100050 lncRNA upstream 61584 27203001 ~ 27203201 (+) True G80217
TU100043 lncRNA upstream 186281 27078289 ~ 27078504 (+) True G80210
TU100041 lncRNA upstream 347946 26916541 ~ 26916839 (+) True G80208
TU100040 lncRNA upstream 348650 26915734 ~ 26916135 (+) True G80207
TU99991 lncRNA upstream 762511 26497769 ~ 26502274 (+) True G80163
TU100068 lncRNA downstream 10826 27288579 ~ 27288856 (+) True G80235
TU100103 lncRNA downstream 517757 27795510 ~ 27796290 (+) True G80264
TU100177 lncRNA downstream 658413 27936166 ~ 27937054 (+) True G80331
TU100212 lncRNA downstream 743721 28021474 ~ 28021684 (+) True G80362
TU100254 lncRNA downstream 928568 28206321 ~ 28207268 (+) True G80392
AMCG00010378 mRNA upstream 342910 26917897 ~ 26921875 (+) True AMCG00010378
AMCG00010374 mRNA upstream 512849 26747568 ~ 26751936 (+) True AMCG00010374
AMCG00010377 mRNA upstream 529267 26735297 ~ 26735518 (+) True AMCG00010377
AMCG00010372 mRNA upstream 626557 26622349 ~ 26638228 (+) True AMCG00010372
AMCG00010369 mRNA upstream 861765 26380582 ~ 26403020 (+) True AMCG00010369
AMCG00010382 mRNA downstream 183289 27461042 ~ 27466622 (+) True AMCG00010382
AMCG00010381 mRNA downstream 231102 27508855 ~ 27509833 (+) True AMCG00010381
AMCG00010379 mRNA downstream 247767 27525520 ~ 27548008 (+) True AMCG00010379
AMCG00010385 mRNA downstream 432860 27710613 ~ 27723371 (+) True AMCG00010385
AMCG00010383 mRNA downstream 485827 27763580 ~ 27775353 (+) True AMCG00010383
TU99961 other upstream 870263 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 1238482 26012484 ~ 26026303 (+) True G80014
TU99797 other upstream 1268371 25992558 ~ 25996414 (+) True AMCG00010366
TU99599 other upstream 2427397 24833109 ~ 24837388 (+) True AMCG00010333
TU99126 other upstream 4561376 22699809 ~ 22703409 (+) False G79475
TU100084 other downstream 278662 27556415 ~ 27557007 (+) True G80249
TU100109 other downstream 591704 27869457 ~ 27874931 (+) False AMCG00010393
TU100171 other downstream 628744 27906497 ~ 27906829 (+) True G80326
TU100533 other downstream 2216864 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 6626062 33903815 ~ 33935416 (+) False AMCG00010529

Expression Profile