RNA id: AMCG00010381



Basic Information


Item Value
RNA id AMCG00010381
length 477
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00010381
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27508855 ~ 27509833 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGCAAAGCTGGATTCTTCAGATCCTCTCCTCAGAGTTCAGGCTGCAATAAGTGTCCTCCACACAGCTACACCAATGTAGAGGCCTCTACATCCTGCGAGTGTGAGGACAGCTACTTCAAGAGGGACAGTGACCCGTCCAGTATGGCCTGCACAACTCCTCGAAATGCAATTTCCAATGTGAATGAGACAAGCGTGTTCCTGGAATGGATGGCCCCTGCAGAAACAGGAGGCCGGAAGGATGTGACCTACAATATTGTATGCAAGAAGTGCACCTCAGACTCTCAACTGTGTGAGGAATGTGGCAGCCATGTCCGGTATATCCCTCAGCAGATGAGCTTACGCAATACCTCAGTGATGGTGGCAGATCTTCTGGCACACACAAATTACACTTTCGAGGTGGAAGCCATCAATGGAGTGACAACTCTTGCCTCCCTACCAAGACAGTTTGTTTCTCTAAACGTGACAACCAACCAGGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU100068 lncRNA upstream 219999 27288579 ~ 27288856 (+) True G80235
TU100050 lncRNA upstream 305654 27203001 ~ 27203201 (+) True G80217
TU100043 lncRNA upstream 430351 27078289 ~ 27078504 (+) True G80210
TU100041 lncRNA upstream 592016 26916541 ~ 26916839 (+) True G80208
TU100040 lncRNA upstream 592720 26915734 ~ 26916135 (+) True G80207
TU100103 lncRNA downstream 285677 27795510 ~ 27796290 (+) True G80264
TU100177 lncRNA downstream 426333 27936166 ~ 27937054 (+) True G80331
TU100212 lncRNA downstream 511641 28021474 ~ 28021684 (+) True G80362
TU100254 lncRNA downstream 696488 28206321 ~ 28207268 (+) True G80392
TU100289 lncRNA downstream 751694 28261527 ~ 28262672 (+) False AMCG00010407
AMCG00010382 mRNA upstream 42233 27461042 ~ 27466622 (+) True AMCG00010382
AMCG00010380 mRNA upstream 231102 27264785 ~ 27277753 (+) True AMCG00010380
AMCG00010378 mRNA upstream 586980 26917897 ~ 26921875 (+) True AMCG00010378
AMCG00010374 mRNA upstream 756919 26747568 ~ 26751936 (+) True AMCG00010374
AMCG00010377 mRNA upstream 773337 26735297 ~ 26735518 (+) True AMCG00010377
AMCG00010379 mRNA downstream 15687 27525520 ~ 27548008 (+) True AMCG00010379
AMCG00010385 mRNA downstream 200780 27710613 ~ 27723371 (+) True AMCG00010385
AMCG00010383 mRNA downstream 253747 27763580 ~ 27775353 (+) True AMCG00010383
AMCG00010390 mRNA downstream 276604 27786437 ~ 27795327 (+) True AMCG00010390
AMCG00010384 mRNA downstream 300575 27810408 ~ 27813573 (+) True AMCG00010384
TU99961 other upstream 1114333 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 1482552 26012484 ~ 26026303 (+) True G80014
TU99797 other upstream 1512441 25992558 ~ 25996414 (+) True AMCG00010366
TU99599 other upstream 2671467 24833109 ~ 24837388 (+) True AMCG00010333
TU99126 other upstream 4805446 22699809 ~ 22703409 (+) False G79475
TU100084 other downstream 46582 27556415 ~ 27557007 (+) True G80249
TU100109 other downstream 359624 27869457 ~ 27874931 (+) False AMCG00010393
TU100171 other downstream 396664 27906497 ~ 27906829 (+) True G80326
TU100533 other downstream 1984784 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 6393982 33903815 ~ 33935416 (+) False AMCG00010529

Expression Profile