RNA id: AMCG00010383


Basic Information

Item Value
RNA id AMCG00010383
length 3681
RNA type mRNA
GC content 0.37
exon number 11
gene id AMCG00010383
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27763580 ~ 27775353 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAAAACACTGTGTAGTGCTCACTAATAATTAACATCTACCTGGGGCTTCCCAACAGCTGAAAAGTTACACTGTCTGAACGCCTGATCTTTGACATGGTTTTCCATTGGCCACAGAAGGAATGATGTGGTACTGACTAAATTGGATTTATGTGCCATTGAATTACAAAAGGTGGATTCATTGAGCATACATACAATGAATTCTGGAAAGCCATCATCTTTTGTTCGCATTGGAGAAAAGAGAGCCATTTCCAGGGCTGAGTTCTTGTCTTTGCTCAAAACCTACAATTGCTTTTTGACAGAGAAGACTAACCTGCAATTCACTTTTCACGAGGAGGGAAATAACATAGTTGTCGATGGACTCCTGATCATATCGTGGGGTGTTCAACGGCCTATTAGGTTGAAAATACAGGATGAGAAACAAGTGCTCTCCTTCATGAATCCCAGTTCACCAGACCCGACCAGTCCACTTGGAGGCAAGAGAGGGATGACACGATGGGGAGAATTTGATGATCTTCACCATATTGATGAGatggaagaaacaaaacaagagactCCCGCTGAAAACTCAAACCACAATTCAGGGCATAACCCTTATGAATGCAGCACACTGAAACTGCCTAGGGCACAGGCAGCTCTCGAAGAGGCATCTAACCTCTATCGCAGCATGAGCGACGCCTCGCTGGTGAAGAAGAGAGTGAAGTCCAAGGCAGCAGCAGAGAGGCAGCATGCCAGACACCACAGGTGCTCCATCAATGGCCATTTCTATAATTATAAAACTTCTATCTTTACTCCAGTATTTGGAACTTCAACAAATGTACGGATAAACAGCAAAATGACAACAGATGAAGTTATAACTCAGCTTCTTCACAAATTTAAGATAGAGAATGATCCAAATGAGTTTGCATTGTATTGCCTTCATCAAAGTGGAGAGCGAAGGAAACTAAACAACAGAGACTTTCCCTTGTGGGAAAGACTTCTTCTGGGACCTTCAGAAAAAAttgctaaaatgtttttaatggaacAAGATGAGCAGGAAGTAAGCACTGATGTGGCACAGTATCTTAACTTTGAACTGCCTATTCTGGAAGGATTTTTACATAAGTTAGAAGAGGAGGAGAACCGAGAGGTGCAGAAAATCATCACAAAGTACAGACAACGCAGACACGTGATTCAGCACATCCATTCCAAAAAAATGCCAAGGACAGAAACAACTgtttaacaagaaaacaaaatcaccaaGTGGAGGTTAGGATAAGCATTAGGCATAGTTATAGACCCTACCATGTTGTCCATTAGTGCACAATGAACTATTTTTGATACAACTATATCATATATTCATTGATTggagttttgttgttttttcagtaatatatattatatattttatttgagtaCTTTGTAAATCCATGTTATGGGTATTAAACCCTCTAATAGTTAACATAATGGTGAATgttgaatacaaaatgaaaataatattgaaattacaggatatacattttttttttaaacaacaacattggTTTGTTCGTTTGTCTTAAATAATGAAgcaactaatttaaatatttctaatgtacatataaaaaacaaatctcacattTCTACACATATAGGTCAATACATCTTTAGGCCGAAAGcttaagaatattttttaaatgatgcattTCCTTAATCTACCTCTGTTGTTGTCAGATATATTTAAGTAATAGTTTTACAAAATCTATTCAATGGTGTGCATCACAATCTCATGTACATGTAGAAAATCAGCAAACTTGAACTCAAGAGCATTTATCCATATGTAAACAAGTGCTCTCCATTAAACATTGTCAAATTGTAAACTTGCCagagtttatttttgaaaacaaaactaatcaaaaacaaaaccatgaaattaataacaaatgGAAAACTAAGGGCCAGTTAAATAAAAGAGCTTGCTCTGTGAATTGCTTGATATCTTTGAATGGATATCTGACTGCTAAACTTgtgtggtattaaatctaacatgATTTCTGCTGTCAAACCACCTTCTCACAGATCTTTTCTTGCACAAGCgagggaataaaacacagctttgacccacctgctgctagaaaactacacaactgtacatgtttagttagatgctacttttttatcatttttaatgtaactgccatgatgtacagttttgtagtttgctgGCTAAAGTTCTATTTAGTctcgcccaacaatacagttgGAATGGTCAATTTTGTTGCtgttaaatcaagaaaatacttttgagaaAGCAACCTGCAAATGCTCTTGCAGTACTCACCATGGACATATGGAGCTGTCTGGATAATATTTAGGGAATATTTTCACAGGCATATATGTTGGcctaacttgcaagccagtacacatCCAAGGGTACAGCGTTTGTGAAATGCACATTGGGTGGATACATATTTAAACCCCCAAAAAACTGTGTTAAaggcaaactacaaacttgcACAACATAGCaaatacatttaggattggaaggaacattttctttgaaaaagATGCCTTAGTTTTGGCACCCTGGGGGAGAATAGCTCTGCTGACATACTCTCTTTAGGGCACTGTGGAAAATCCATTATGTAGATTGGCATATGCTTTCCAAGGGAACAATAATGTTACATTGTTATATTACAAGGTGTACTGTAaatagtatttatgtatggatacgcaatttagacaatggaacaagtgtaaatatagctgtgtaacacaatcatatatttaaaatgtatgtttaaacatttaacactgGTTTGTATTACATCTTTTGCCACTGTGGCCACAGTACAAATATTCTTTGGAGAAAATATTACGAGTATGCAGGTGTGCTGTACCATGCAGGGCTGTCTACTTGCACTGCCCCTTATAGAACCGAGTAAAACGTTCGTACTTTCATTACCTCTTAGCAAACAGTAGATTACTAATATAGCAGAGATCTCATGACAAATTAAAATCGCATCGAGtgatattaaattatgtattttgtacaaATCTACACATCACCTTCAGTTTCAAATGCTGATAATTCGACACACGCAATAGAAAATGACACAATTCTTTGTTCCGAGtctcttctaatcataaatgtaaccactacggtgtaatgttttgtagtttgctattagccgGTGGGTCAAAATACGCTGCACATAAGTGGATGCACATATATAATCAAACACATCAGCATCGATCCACCTGCAAATAGGTAACATCTGGATATGGGCGTCTgccaggaagaaaataaataattacaatagcTCCACAGCTGTCATCAGTGCCggctttggtttttattttgccttctaCTTATTTGTAACCGCTACGAAGTACAGGCTTGTGGTTTTGTATCAGTGGGTAGATTAATGCTTTCGCTTTACACCTTcatctgtgtgtatatgcatgAGCCCTCGCTGCTTCTTGCAGACCATCTGCGGCTTTCAATCTCCAGTTTCCCTCCAATAACAACGAGCAGCTGCGCCGCAACACTCCCTCCTGCAACTCCTCCATTCGCATCTTCTaacatgtttgatttaattcatattttacagcACAGCATGTATCGTAAAGCCAACCTACATTAGTGAAGTATGGTTCATATAACATGAggtttatacactcacctaaaggattattaggaacaccatactaatactgtgtt

Function

GO: NA

KEGG:

id description
K09854 RASSF6; Ras association domain-containing protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100068 lncRNA upstream 474724 27288579 ~ 27288856 (+) True G80235
TU100050 lncRNA upstream 560379 27203001 ~ 27203201 (+) True G80217
TU100043 lncRNA upstream 685076 27078289 ~ 27078504 (+) True G80210
TU100041 lncRNA upstream 846741 26916541 ~ 26916839 (+) True G80208
TU100040 lncRNA upstream 847445 26915734 ~ 26916135 (+) True G80207
TU100103 lncRNA downstream 20157 27795510 ~ 27796290 (+) True G80264
TU100177 lncRNA downstream 160813 27936166 ~ 27937054 (+) True G80331
TU100212 lncRNA downstream 246121 28021474 ~ 28021684 (+) True G80362
TU100254 lncRNA downstream 430968 28206321 ~ 28207268 (+) True G80392
TU100289 lncRNA downstream 486174 28261527 ~ 28262672 (+) False AMCG00010407
AMCG00010385 mRNA upstream 40209 27710613 ~ 27723371 (+) True AMCG00010385
AMCG00010379 mRNA upstream 215572 27525520 ~ 27548008 (+) True AMCG00010379
AMCG00010381 mRNA upstream 253747 27508855 ~ 27509833 (+) True AMCG00010381
AMCG00010382 mRNA upstream 296958 27461042 ~ 27466622 (+) True AMCG00010382
AMCG00010380 mRNA upstream 485827 27264785 ~ 27277753 (+) True AMCG00010380
AMCG00010390 mRNA downstream 11084 27786437 ~ 27795327 (+) True AMCG00010390
AMCG00010384 mRNA downstream 35055 27810408 ~ 27813573 (+) True AMCG00010384
AMCG00010395 mRNA downstream 76209 27851562 ~ 27867176 (+) True AMCG00010395
AMCG00010393 mRNA downstream 94086 27869439 ~ 27874921 (+) True AMCG00010393
AMCG00010396 mRNA downstream 117257 27892610 ~ 27898498 (+) True AMCG00010396
TU100084 other upstream 206573 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 1369058 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 1737277 26012484 ~ 26026303 (+) True G80014
TU99797 other upstream 1767166 25992558 ~ 25996414 (+) True AMCG00010366
TU99599 other upstream 2926192 24833109 ~ 24837388 (+) True AMCG00010333
TU100109 other downstream 94104 27869457 ~ 27874931 (+) False AMCG00010393
TU100171 other downstream 131144 27906497 ~ 27906829 (+) True G80326
TU100533 other downstream 1719264 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 6128462 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 6926085 34701438 ~ 34707394 (+) True G81496

Expression Profile