RNA id: AMCG00010384


Basic Information

Item Value
RNA id AMCG00010384
length 2260
RNA type mRNA
GC content 0.38
exon number 3
gene id AMCG00010384
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27810408 ~ 27813573 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTCTGCCCTTCTTGCCTCTCCACCCCTGCATTTGCAGCTGCTGCCGTCTCCCCCACCAAGATGGAGCCCCTTTCCGCATATCCTCTGAAATGCTCGGTGCCAAAAGCAAGAATGTTCATGGTTTTGCTCACAATGACGATATGCACGGCGGGGTTATTTCTAATGCAGAACAAACTTTTCAAAAAGAAGAAGGTTATAGATTTTTACTCTTTGCAAGTCCGGGATATGAAAGGGAGAACCGTTTCCTTGGAGAAGTATAGAGGGAAAGCGTCTCTGGTTGTAAACGTGGCGAGTCAGTGCGAGCACACGGAGCGCAACTACAGAGCCCTGCAGGAGATGCAGCGGGAGCTGGGCACCTCTCACTTCAACGTGCTGGCCTTCCCCTGCAGTCAGTACGGGCACAGCGAGCCGGGCACAGACCGCGACATCGAGTCCTTTGCCAAATCAAACTATGGCACCACTTTCCCCATTTTCAGCAAGATTAAGATCATAGGCTCAGAGGCCGACCCTGCTTTCAAGTTCATTACAGATTCGATCAAAAAGATCCCGAAATGGAACTTTTGGAAGTTTCTCGTTAACCCCGAGGGACAGGTGGTGAAGTACTGGAAGCCCGAAGAGCCCATGGAAGACATTAAACAAGAGGCGGCCGCTTTAGTGAGGGAGATCATCTTAAAGAAAAGGGCAGAGCTTTAACAGCTTACCCTTGACCTCAATCGATGAACAACTTGTGCCTTTTTCACTGCGTCACACAAGATCTTGTGCCTTAATTTGCTCACCAAACAgagttatattttttacaggagttgcatttttcacatttccgCTCAtggcattgtttttctttggagtATTAACCACAGCCACATGCATAGATAACCTCAAACAATTCAATGTATACCTGTTTAGCAGGTGCTCACTGCTTGACATTTTGATCAGCTTTTTATCTCTTTTGTTGTCATGCATGCAAAGTGAGGGATTATGTGTCCTAGACTATCCCATTGAATTATCACTAGTTTAAACTCCTCTTTTGCATTGAATTTCAGAGTCatccaaaaatacatttctgcatgaTGCACTACAGTCTTGAAGAACAACCTTGACAAGGCCTTGGACTGTTAATCATTACATTATCGACAGGACAGAGATAAATATCTTATTTATCTTATGCTAAAAGAAGTCAGGGGTCTTGTTTAGTCCATACTGGCTTAAGGACCATGTCTCTGCAGAAACTGAAAAGGAGTGTGACCTTTTGACCTTTTGGTGTTTGTGGGGATACACCATTAAGTTGATTATAACTACTAATTGTTTGTGGTTGTTGTATCgttatattgtacatttgcaGTTGTAAAATTGGAGGCATGTTTTTTTCAGGTCAGACTTTATAaaagttgtttgtgtgttgtagGTGGGTGGTTGAAACCTAAGGTACAGATAAAAGTGTTTCATTTATAGATGTTTGTAACCTTGCATTACATAATTTGATACACATGAAAATTATTTGATACCATtggtaatttgcaatttgttcctaaacattttcactcatcaataacataaatattgtGTCTGATGGATACAGGTTAAATGAGTTATGGCATCACATGTCTAAAGTTTGTAAAGATATGGTTCAGTCTAATCTTTGCCAAAACTCTGTAGTGTTATTGCATAAATATACCTGATGCTGGCTTTATTTGTAGTGAAGATACTGTGACATTCAATGACATATAAGTACTGATAAGCAggtgtaatttaattgtaataccTACTACTTTTAATAACCAGAAAGGGTTTATCCCCAGATAGAGTTGCTACATTTAATCCATAAGGAAATGGTTACTTTTCATATTAGGCCTAGactgaatcaaaactttgacctgccaATTAACTGCAAATGACAAATTTGTCACTATAAAGATGCCACTTTATacttctaataaataataaatggataGTGTCTGAGtttgtaacatttaatttgtaggTCGgtcaaaaatgtgattttatgcAGGCGTAAAGAAAGGATCATGCTggatttttttacattacactaCAATTATCAAGAGTGCTTTAGTATTACATTCcacttcaagaaaaacaaaggtgacatatatcttatttttatatcagTTATGAAAGTTGAAATTGTGATATAAAGTGTATTGTGTAAATTAGAACTGTATGTGACCTTTTTTGTACTCTGTTAATATACAAAAGAcccagtatatttttaaagtttcagtTTATAAGTAAATGTCag

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004602 glutathione peroxidase activity molecular_function

KEGG:

id description
K00432 gpx, btuE, bsaA; glutathione peroxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100103 lncRNA upstream 14118 27795510 ~ 27796290 (+) True G80264
TU100068 lncRNA upstream 521552 27288579 ~ 27288856 (+) True G80235
TU100050 lncRNA upstream 607207 27203001 ~ 27203201 (+) True G80217
TU100043 lncRNA upstream 731904 27078289 ~ 27078504 (+) True G80210
TU100041 lncRNA upstream 893569 26916541 ~ 26916839 (+) True G80208
TU100177 lncRNA downstream 122593 27936166 ~ 27937054 (+) True G80331
TU100212 lncRNA downstream 207901 28021474 ~ 28021684 (+) True G80362
TU100254 lncRNA downstream 392748 28206321 ~ 28207268 (+) True G80392
TU100289 lncRNA downstream 447954 28261527 ~ 28262672 (+) False AMCG00010407
TU100364 lncRNA downstream 911434 28725007 ~ 28725281 (+) True G80468
AMCG00010390 mRNA upstream 15081 27786437 ~ 27795327 (+) True AMCG00010390
AMCG00010383 mRNA upstream 35055 27763580 ~ 27775353 (+) True AMCG00010383
AMCG00010385 mRNA upstream 87037 27710613 ~ 27723371 (+) True AMCG00010385
AMCG00010379 mRNA upstream 262400 27525520 ~ 27548008 (+) True AMCG00010379
AMCG00010381 mRNA upstream 300575 27508855 ~ 27509833 (+) True AMCG00010381
AMCG00010395 mRNA downstream 37989 27851562 ~ 27867176 (+) True AMCG00010395
AMCG00010393 mRNA downstream 55866 27869439 ~ 27874921 (+) True AMCG00010393
AMCG00010396 mRNA downstream 79037 27892610 ~ 27898498 (+) True AMCG00010396
AMCG00010392 mRNA downstream 106005 27919578 ~ 27933573 (+) True AMCG00010392
AMCG00010394 mRNA downstream 145134 27958707 ~ 28013490 (+) True AMCG00010394
TU100084 other upstream 253401 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 1415886 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 1784105 26012484 ~ 26026303 (+) True G80014
TU99797 other upstream 1813994 25992558 ~ 25996414 (+) True AMCG00010366
TU99599 other upstream 2973020 24833109 ~ 24837388 (+) True AMCG00010333
TU100109 other downstream 55884 27869457 ~ 27874931 (+) False AMCG00010393
TU100171 other downstream 92924 27906497 ~ 27906829 (+) True G80326
TU100533 other downstream 1681044 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 6090242 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 6887865 34701438 ~ 34707394 (+) True G81496

Expression Profile