RNA id: AMCG00010392


Basic Information

Item Value
RNA id AMCG00010392
length 2778
RNA type mRNA
GC content 0.41
exon number 10
gene id AMCG00010392
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27919578 ~ 27933573 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTATATCCGTCAAAGCGGCTGGTGGGGAAGCGCGGCCAGCCGTCCAATCCCAGGCTGCAGTGCTGGCACCGTGTCTGCCTGCAAGCCGGCTTCCGTTTCTTTTTCCTGACTTCCTGgtggttttgtgtgtttattgagcTCCAGACTTGAGCACAGTTGAATGGTGGACCACTTTCACTTCAGGATTATGGACGTTGTATATGTACAATATTAGAATCGCGGGTGATAGTACTGCATTAAGAACAACATTAGGCCTCTCAAGCAGGCCCAGCGCCTTTGGCTGCGCAGTAGTCGTGTGGGGGGAAAATATTTGTGATGGGAGGCTTGGGAAACAGTCGGCGAGGTGGGAGATCTCCTCCACTCCTAATTGTTGCTTTAATTGCCTGCTTGGTCTTTTTGGGATTCAACTACTGGATATCAAACTCTAGGAATATAGAACTCCAGACTCGGGTATATGAGCTTGAAGGAAAAGTGAGGCGGGCAGCAGCAGAGAGGGCTGCGGTCGAACTGAAGAAAAATGAGTTCCACGAGCAGCTCGGCAGGCAGAATGAACAAATGAATCGGATCGAATCTTTGCATCAGCAACAGCTGGTGAAGGCTCAAGTGTCctggaaagaagaaaaggaGAACTTGCAGTTCAACATTTCTTCAAGTTTGAAAGCTATCCAGACAATGAAAGatcAGTTGAAAGATTTGGGGAAATTACAGAAGGGACTTCAGGAGTGTCAAGGCAACCAGAGTAGCCTTCTGAAAAAACTAACATATGACATGACCCAGTGCAATGCCCAGATCATAGAGCTGAAGGAGGAGCACATCGAGAAGCTTTCTGCGCTCAAAAAGGAGATTCAGCAAAAGACAGAGAAGAAACCTGCAGCTGATGTCAAAGCCCATATGCCTGAAGCAGTTCCCACAGAGGTAAAAAGCAAGGTTGATGAAATTAGAGATACAGCAAAGCGAGGACAGGAAGAGACGCCTAAAGTTACTGTCCAGTTGCAGAACACAAGCCACGtggaagaacaaaataaaataaaaactttaactCCGAAGCCAAAATTCACCGAGTTTGAGACCAATGAGATTCCAGGCAGTGACAAAAATGATGTTCAGTTGACACAAGCTGGGAAGGAAGTTAAGAACCAGccagaagaaaaggaaaaaacacaacctACAGCAGTGAAAGAGAAGGACAACACTCCGGAGAGTCAGTTGGACCATGAAGATGAGGAAGAAACGGATGACCTTGGAAATTACCTCCAGAAAGGCAATGGaactgaggaggaggaaggggactTGGAGGGAGAGCAATTCATTCAGAATGAGCAGATCTTCGATGATTCGCCCAATGGAGAAGTACCTGGAAATCTGGATAACGAAAAATCTGCAGTGGTGATGGGAAACGAGCCTGCGGACTACAATGGAGATGAGGACAATGTGGGGGAGTTTGAGGCAGACAAACAGGCCGAACTTGCTGAGAACGCAGGTACAAATGAAAAGGATCTGATGGATATAGATATTTAGTTGTTTGACATTTGAGGAATGTTTCTGAGGATgccagtaaataaaaacaaaatcggTTGCACTGTCAATATAAATGACTGCAGTAAAATAGATCTGAGCTTCCAAGTGCTTTCTATAGGGTCAGGAGTGCAACGTGTTACTTCTGTTGAAGCACAATACTGTAgggtaaacaacaacaacaacaacacattgtaGCATAATGTCGCACAGCCTTAAATAACGAATGAACTGTCCAAAttgaatgtatatttaacaGGGTTCTGAAGTAGACTGGAACATTTACTTTTTGCACTGCTGAATAAGCAATCTGTACATACAAAGTCATTCTCATTGCTCACATGAATAATCAGTGATTAAAGCTGTTGGTGTGGGAGCAAATCATTTATGTTTCTAATCAGCCTTTTTATTTCACATCATGATTACTTCTGAGAAATGGCTTGAGGATTTCTCTCGGCCTTCCGTGATTTAGAATTGTATACCCTATTATATTGCTTTTCAAATCTGAATCAGAATACATTCAAAGGAGAATGTTGCATTAAATGACATCCCCATGGTTAAGAGATTGTGAAAGATAAAGGAGTGCATCTGCCAATTGCCTAAGGACCATTCATTACCAAAATTATTGCTATCAAAGAAAGGAGGCAGAGTTCTGTGCTGTTCTATGCCACATATTGACTGGTTTAAAAAAGTATGGGTCTGGTTTGTGtgatattgaaaaaaatattcagccAATAATTGCCTCATCTCAAACTTACTGTTTATGTTGCCATTTCAGGGTATTTGGATTACATTATGCTTTAATAAAACCTCagaggttattattttattaatgtccATCCAAGACTGAATAAATGTGAACTTTTTTGTTGTAGAATATGGAGGTAGAAATATTTTAACTTATGGAAAcctattgtgtattttattttatatatgcatcACCAAATGTTTTCATGTAAATGATCAATTATACTCTTTCTGTCAAAGGAGGCTTTTTTactgggttgtgtgtgtgtggaggttcaGCGGAATCAGAACAGTTCTGCAGTACTTTGAGCTTTCACAGGTGTATTTGTCACAGCCTGTAGAGGATTTCTGTTGTCTGCCtcttgtcatttgtttttaattgttcttgTAATTGGCATGTGTTTAGAGATTACATAAATTACtcactaaaatataatttaactgATTTGTTGCAACTATACTAGATaatgaatagtttattttgtatgaataaaacaaatgtaaacctctgtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100103 lncRNA upstream 123288 27795510 ~ 27796290 (+) True G80264
TU100068 lncRNA upstream 630722 27288579 ~ 27288856 (+) True G80235
TU100050 lncRNA upstream 716377 27203001 ~ 27203201 (+) True G80217
TU100043 lncRNA upstream 841074 27078289 ~ 27078504 (+) True G80210
TU100041 lncRNA upstream 1002739 26916541 ~ 26916839 (+) True G80208
TU100177 lncRNA downstream 2593 27936166 ~ 27937054 (+) True G80331
TU100212 lncRNA downstream 87901 28021474 ~ 28021684 (+) True G80362
TU100254 lncRNA downstream 272748 28206321 ~ 28207268 (+) True G80392
TU100289 lncRNA downstream 327954 28261527 ~ 28262672 (+) False AMCG00010407
TU100364 lncRNA downstream 791434 28725007 ~ 28725281 (+) True G80468
AMCG00010396 mRNA upstream 21080 27892610 ~ 27898498 (+) True AMCG00010396
AMCG00010393 mRNA upstream 44657 27869439 ~ 27874921 (+) True AMCG00010393
AMCG00010395 mRNA upstream 52402 27851562 ~ 27867176 (+) True AMCG00010395
AMCG00010384 mRNA upstream 106005 27810408 ~ 27813573 (+) True AMCG00010384
AMCG00010390 mRNA upstream 124251 27786437 ~ 27795327 (+) True AMCG00010390
AMCG00010394 mRNA downstream 25134 27958707 ~ 28013490 (+) True AMCG00010394
AMCG00010402 mRNA downstream 222683 28156256 ~ 28169012 (+) True AMCG00010402
AMCG00010404 mRNA downstream 258009 28191582 ~ 28206181 (+) True AMCG00010404
AMCG00010401 mRNA downstream 276439 28210012 ~ 28212808 (+) True AMCG00010401
AMCG00010403 mRNA downstream 282283 28215856 ~ 28232465 (+) True AMCG00010403
TU100171 other upstream 12749 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 44647 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 362571 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 1525056 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 1893275 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 1561044 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 5970242 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 6767865 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 7078742 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 7536762 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile