RNA id: AMCG00010394


Basic Information

Item Value
RNA id AMCG00010394
length 5275
RNA type mRNA
GC content 0.42
exon number 24
gene id AMCG00010394
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27958707 ~ 28013490 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACATCTGAAATGGTGAAGGTTCCCAGTAATTCCCGGGTCCTTACTCTCCTTGCCCAACTTGAGAAATTAAATGCAGAGTCCGTGGTGCTGGATGTGGAAAATGCGAGACATATCACATCGAAGATCCTCCATATCATCCAAACACAAGaGAAAACGAGAAAAGAAGTGATGACCAAGGGCTCCAATGGGATGGAAGTAATCTTGTCAACATTAGAGAATTGTCGAGACCTTCAAACTACACTGAATATACTATACATCCTAAATGAACTGGTCTCTGTGGGAGGTGGTCGGAGAGTTGGGGTGCTGGTATCAAAGGGGGGGACCCCAAtcctcctgcagctcctgtTAAGTGCCAGCAGAGACTCCCCACCCAGTGAGGAACTCATGGTGCAGCTGCACTCCATCCTGGCCAAAGTGGGACCAAAAGACAAGAAATTTGGCATCAAAGCCAGGATAAATGGAGCCCTGAATATTACCTTAAATTTGCTGAAGCAAAACTTGCAGAATAACAAGCTGCTTTTACCATGTCTGCAGGTTCTACGGGTTTATTCAAGCAACTCTGTAAATGCTGTGTCACTTGGCAAGAATGGAGTTGTGGAgctgatGGTTACTCTGGACACTTTATCAGCTTTGCTGAAGTCAAAAACTAATGCTCGCAGGGCAGTAGACAGGGGCTATGTTCCTTCATTGTTGTCAATTTACCAAGACTGGCACAAGCAGGACAACCGACACAGGCATATGCTAATCCGGAAAGGGATTTTAGGCTGCATCAAAAACATTACGAACATAAAGCTGGGAAGGAAGGCATTAATTGATGCAGATGGCATGAGGATTCTATACAGCACTTCTACAGAGTGCCTTCCAGTGAGAACATTGGATCCACTGATTAATACTTCAAGCCTTGTCATGCGAAAGTGTTTCCCCAAGAACCGCCTCCCAGTGCCaacaataaaaagtgtttttcacttcCACCTGCCTGTGATCCCAGCGAGCGGCCCTGTGGCACAGCTCTACAGTCTTCCTCCGGAGGTGGATGATGTAGTTGATGAAAGCGATGATAACGATGACACAGAAGCTGACACAGAGAATGACACTGAGAATGAAGATGAGGAAAAGGACCAAAATTTGCAGAATGACGATATTGAAACCGATATCAGTAAATTGTGCCCAAAGCAGGAAATTGGTCGACCACTTGAAGAGTTGAAAATGTATGAACGCTTTTTTCCAGAACTCAGCGAAAACTTTCAGGAATATAAGTTTGCTTTTGAGGAGATCAGTGCAAACACTACAGTACTGGAACCAAAGTTGCCCGGCACCATTGTTGTTCCCACAGCCGGGGATGAGCCAGCCATAGACCTCAGCTctacaaaaaaggaaaccaaactAACTACGGAAGAGCAAACAAAACCGCAGTCTCTTAACACTCAGGCAGGGGAATCTGTAAAGGCCGCAGCACCTGTGGACCTTGAGAGTATAGTAATCTCAAAGCATGACAAACACTCCCCCGATGCAAACAAACTGCTTATTTCCCAGTGCCTAAAGCATGATTTAGTCAGGGAAATGGACCGGCTGTCCATAGATGGGGAGAGTGCCTCAAACAATCTCAAGTGCTGTAATTCAACGGGCATAAATGGACAGAGATATAAGGGAGCACTCAATTCTACTACCTGTAACAAAGGCTGCCAGAATTTCTCAGGAACTAGTGGGTCTTCGGCAGAGCATTTGTCTGCTCCTCCCTGCAGCCCCAGAGGGGAGCCTGACAATGAGGATGACTGTAGCTCCCATTCCTCAGGGGAACAAGGGGTCTTGGAGGTGCCAGACACTGCTGCCTTACTCCCCTTGCATGACCCAGAACTCTACATTGAGACGGTCAAAACCACCAAATCTGTCCCCCAGTATGCTGAGGTAGCCTACCCAGATTATTTTGGTCATATTGCACCTACGTTTAAAGAGCACATCTTGGAAAGAGTgACAAAAATCTTTCAGGATATAGAACGATTGATCCATTCCAATGATATAATTGACAAAGTTGTCTACGATTTGGACTTGCCAAGCTGTCCAGTCATTGAAGACGGAGAGTCTTTGAAATTTAACTCGCAGTTTGAATCTGGAAACCTGCGTAAAGCCATTCAAGTTAGAAAGTTTGAGTATGACCTTGTTCTGAACTCTGATATAAACAGCAACCATTACCATCAGTGGTTTTACTTTGAGGTTAGTGGGATGAGGAGCGGTGTGCCGTACCGTTTCAACATCATCAACTGTGAGAAGTCCAACAGCCAGTTCAACTACGCTGGGGGTCAGAAAGGAAAATCTTACTACACGATGACCTTCACTGTGACCTTTCACCATAGGGATGATGTCTGTTACTTTGCATACCACTATCCTTACACATATTCTACTTTAAAGATGCACCTTCAGAAACTGGAGTCCATGTGCACGCCACAGATTTACTATCACCAAGACGTGCTCTGTGACACTCTGGGTGGAAACAGCTGCCCTGTTCTGACTATCACCGCAATGCCAGATTCCAAACACATTGAACAAATCTTTCAGTTTAGGAATCGTCCCTATATTTTCCTCACGGCCCGAGTGCACCCTGGAGAGACCAATGCGAGCTGGGTGATGAAAGGAACTCTGGAGTTCCTAATGAGCAGCAGTCCAGTGGCCCAGAGCCTCAGAGAGtcctacattttcaaaattgttCCCATGTTAAACCCCGACGGAGTCATCAACGGAAACCATCGATGCTCACTAAGCGGTGAAGATCTCAACCGTCAGTGGCAGAACCCAAGCCCTGATCTTCACCCCACTATTTATCATACCAAGAGCCTATTACAGTACCTAGCTGCCGTGCAGAGGACCCCATTGGTGTACTGCGATTATCACGGGCATTCCCGCAAGAAGAACGTCTTCATGTACGGCTGCAGTATCAAGGAAACAGTGTGGCAGACTAATGTGAGTGCCACCTCCAGTGAGCTGCACGAAGACCTCGGGTACAGGACTCTACCAAAGATTTTAAGCCAAATAGCCCCTGCATTTTGCATGAGCAGCTGCAGTTTTGTGGTTGAGAAGTCTAAAGAGTCCACAGCTCGTGTCGTGGTGTGGCGTGAGATTGGGGTACAGAAAAGCTACACCATGGAAAGCACTCTCTGTGGCTGCGATCAAGGGAAATATAAGAGTCTTCAGATCGGGACAaaggagctggaggagatggGTGCCAAGTTCTGTGTCGGATTGCTCCGTTTAAAAAGATTGACCTCTCCACTGGAATACAGAAATCCTTCCCACTTCCTGGATGTGGAGACGGACTTGATTGAGTCCAGCTGTAAAGTCACAAGCCCCACAACCTATGTGCTTGACGATGATGAGCCACCCTTCTTGGAGGAAGTGGACTATAGCGCGGAAAGCAATGAGGAGAATGATGCTGAACTGAACGAGAACACCGTGGACTTTGACCCCTATGTCCCAGAAGACTCGGACTCGGAGACAACCAGGAGAGACTTATTGAACTGAGCAGAGCTGCCTGCCACACTGGAATGGGATGACATGTATTTAACTGTTTCCAGCAAAGAATGTGAAAGCTTTCTCATACAGGGAGATTAAAATcaacattgtattatttctaaatgtgtgAACCCTTTCATATCCCAAGCCTTCATTCTTGGTGTATTGATGGGGGTTTGGCGATTTGAGAATGATTTgttgttcacattttgttttattgcactttatttaGGATAACAGTAGTAGGTACAACCTTCAgcataaataaacagcaaactaatgcaaaaaataCTCACTTTTTGAAGTTAAGGAATAATAGAAAGGAACTTGGATTTTCACAGCTTGTTGATGTTGAGCACCAATAGTTTAATCCTAAAGATATAGCAatgacttattttaaaaacattgatcaCACTGGagtttgcattattattaactcACTATGAGTTTAATTAATAACTGGATTCTGACTCCcccataaacaaacacacacacatcgatATTCAGGATAATTGTCATATTAATAAGTAACCAATAAATGGTAGTAGTTTTAAGAAGTGACATCTATCAACATTGCTTTTCCATGTTTAGTCATAGCTACTAcatattgcttttgtttctgcagTCACTGCATGacttcatattttgtttcagtttatttaaattgttatgcCATGTATTTGTCAAAGAAATATGTATGGTAAGATCCttgtggtgctgtgtgtgtattattgtgaAAAACAGTGCAGATCTGTACAGTATCCTATGCTGTATGTATTTCTTGGAAGAAAAaccttttaatttgattgtgaAGATAATAATTTGAAGTTTGCTATAATAAATTTTAAATGCCTGAACAATTTGCATGCTTTAATGTATTTGACAGTTAATGGCTCTTTTAACCAAATTACCTTTTGTATTATCTAGTAGTGGCCTCTGATTAGAACTGGAAAAAGGGAGATTCTACATCTTAGGAGAAAGATGGACATAGATGAGTCGAATGCACAAGAGGCCATGTTGCCTCCATCAGATCTAGACGCAGTAGAAGTCACATACCTGTAGCAACATTTTACAAAGGGAAGCATATAGAGTCGTTTACATCAGTGTATAATTGTGagtctgtattttaatatctgaCCAGTAATCatacgttgttgttttttctatagATGTATAATAGTGTGCTATTAAACATGTCTAAATATTTAACTCTGCCATTTGCACATGTAGTTGTTCTGTTACACTGGCTgacataatttttattttcacatttcaggTTAGTGTTTAAAAGGGCTATAAAACAGAATGTTCAACACTTTAGGATCTCAATATAAAGGGCCTTTATTTGCAAGTCATCTTTGTAATAATACACCAATAAACAAACGTGACACTTCATTGACACTACGTTTGCTGTTTTTTGAAGTGGCAGATGAACTCGGCTCTCCAATCTTCTCTCCTGGCACATTGATCTGTTTCTTCTTTCAAACCAAACTGGCACACAAACTGAAGTGTCAGCCCTCGGCAAAGCACTGTGTTAACACATTGAGTAGTTCATACCAAAAACAGTTACGTTTAAGTTTCTGCTTTGAGTTTTTCAAGATAGCATCAACCCTctcattaaatttaattaatctgtgttTGTAATGGCCATCTTACTTGCATTTCTTGCGTTTGGGTTTGACACTCCTCTTTTAAGACTGATATTCATACAGCACCTTCAGTATCAAGTAATCTGTAAATATGACTAAAGCCAGCAATATTAATATGGTT

Function

GO: NA

KEGG:

id description
K23435 AGTPBP1, CCP1; cytosolic carboxypeptidase protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100177 lncRNA upstream 21653 27936166 ~ 27937054 (+) True G80331
TU100103 lncRNA upstream 162417 27795510 ~ 27796290 (+) True G80264
TU100068 lncRNA upstream 669851 27288579 ~ 27288856 (+) True G80235
TU100050 lncRNA upstream 755506 27203001 ~ 27203201 (+) True G80217
TU100043 lncRNA upstream 880203 27078289 ~ 27078504 (+) True G80210
TU100212 lncRNA downstream 7984 28021474 ~ 28021684 (+) True G80362
TU100254 lncRNA downstream 192831 28206321 ~ 28207268 (+) True G80392
TU100289 lncRNA downstream 248037 28261527 ~ 28262672 (+) False AMCG00010407
TU100364 lncRNA downstream 711517 28725007 ~ 28725281 (+) True G80468
TU100365 lncRNA downstream 757737 28771227 ~ 28775463 (+) True G80469
AMCG00010392 mRNA upstream 25134 27919578 ~ 27933573 (+) True AMCG00010392
AMCG00010396 mRNA upstream 60209 27892610 ~ 27898498 (+) True AMCG00010396
AMCG00010393 mRNA upstream 83786 27869439 ~ 27874921 (+) True AMCG00010393
AMCG00010395 mRNA upstream 91531 27851562 ~ 27867176 (+) True AMCG00010395
AMCG00010384 mRNA upstream 145134 27810408 ~ 27813573 (+) True AMCG00010384
AMCG00010402 mRNA downstream 142766 28156256 ~ 28169012 (+) True AMCG00010402
AMCG00010404 mRNA downstream 178092 28191582 ~ 28206181 (+) True AMCG00010404
AMCG00010401 mRNA downstream 196522 28210012 ~ 28212808 (+) True AMCG00010401
AMCG00010403 mRNA downstream 202366 28215856 ~ 28232465 (+) True AMCG00010403
AMCG00010400 mRNA downstream 219454 28232944 ~ 28242085 (+) True AMCG00010400
TU100171 other upstream 51878 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 83776 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 401700 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 1564185 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 1932404 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 1481127 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 5890325 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 6687948 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 6998825 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 7456845 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071782 False 3675 mRNA 0.51 26 NC_007119.7 49885642 ~ 49935358 (-)