RNA id: AMCG00010395


Basic Information

Item Value
RNA id AMCG00010395
length 5120
RNA type mRNA
GC content 0.45
exon number 27
gene id AMCG00010395
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27851562 ~ 27867176 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGAAGTCAGGGACGCCATTTTGGATTTTTATGCGTGTTTGGTCCGGAAACCCACACTATCCTCTGCCTCGGCGGAAACGAGAAACAACAGTATGCAGCGTTTACCGAGAGTGCGGGcttgatttgaaatacaaatggaaGAGACCGGTAGACCTCGCTATTCCAAGCAAGGCAAGGAGAAAGGCAATGTGGCAGACGAGGCTGATACCTGGAGAATCCCCATGCGTACGGAAGGCCTTGATTATGGAAGATTCAGCAATAAACCAGAAAAGGGGTCCCAGAAGAAGAGCTCAACTGGGAGCTTTGCCAGCAGCCCTCGGAGAGTAGGCCAAGATGTCTTGAGTACCAGTCCTGCAGGGTTTAAAAAACTGTCTCACAGCCCCAAGCAGAAGCTGCAGGATGAGCTGAGAGATGGGTTCAGGAAGTTCCCCACACAAGACGATCACGCCAGGGATGACAACTGGAGGGAGAAGAATTTCGGCCGTGAATCAGGCCGGTGGAGGAAGGATTCCTTCCATGAGAGTGGTGAGGATGTGAGCAGGCAGCGAGATGATGGTGGAAGAGGACAAAGGCATGCTCGAAGGCAGCCGCCGAAGGAGATGAACAACGATGAGAGAGCTGAGTCTGTGACACAGTCTGCAGgtagtaaaataaaaaagagagagaggagaaggaatCAAGTTGACAGAGATGACGACAGGGATGGCACTGTTATTGATGAATCTACCTTGTCAGAAAAGGAGCTTCTGGGATTGCAACAAGCTGAAGAAAGGTTAAACAGAGATGAGATTTTCAGACTGAAAAGGCGTCCTCGTGGTTCTCCCAACTCCACGTATTCTTGCATGCTCTGTGATGTTTTACTTGAGTCTATTTCGTCAGCCCATAAGCATATTAAAGAGAAGTGGCACAAGAAGCTAGTAAGGGAAAAGCGTGAGGAGGAGATGCTCACAGCATTACTCCCACCAAATCCTTCGCAGGTGAAAGCCATTGACACAGCCATTGAAAATGTTCTAAAGAAGTATGGCTTAAGCGGTGAAGATTTAATAAGGAGGCAACAGATTGTGATGTCAATGGAGGAAATAATCAAATCGGTTTTACCTGcGTCCTATATTGACCTTGAAGCAGACTTCCACGCCAGAGTGCCTGTCTTGGTTTGCAGAGAAAAGCAAAGTGGTCTACTTTGTAAAGTGAGTGCAGGCAATGACAACGCATACCTCACAACAGAGCACCTGGCAGCTCTGGCAAATCTGGAACCCTGTCTTACTCCTCTTGTGATTGCCTTCAGACACTGGGCCAAGATCTGCCATATTGACCACCCGGAGGAAGGAGGGTTGCCCCCTTACGTGTTGGCCTTGATGGTCATTTACTTCCTTCAGCAGAGGAAAGAGCCCGTGCTCCCTGTGTATTTGGGGACGGATATTGAGGAGTTTTCTCTGAACAAACTTGTAGATTTCAGGCTTACTGGTGTGGAAGATGGTCATGCCAAGCTGGCATTTGGACCAGAATGCCAACGTGAAGTGGCCATTGGGCAGCTGTGGGTAGAAATGCTTCGTTTCTATTTACTGGAGTTCAACATGGCCGATCATGTCATCAGCATTCGTATAAAGGAGCTCTTCACGAGGGAGTCCAAGGACTGGCCTAAAAAGAGAATTGCCATAGAAGATCCTTACTCTGTGAAGAGAAATGTGGCAAGGACTCTCAACAGTCAACTCATGTATGAGTACATTCTCCATTGCTTAAAAACAACCTATAAGTATTTTGCTTCTCCTTTTAAAAAGTACGGGAAGCTGAACAAGCAAAATCACAAACGGGAAGAGTTTCAAAGCCCTGTAGCTGCACACAGTGGAAGGGAAGAGAATATGCCACCAGATCTGGATGAGTTGCGTTTGATCCAGTCAGAATTAGACGGTCTCAGCATCGACAGTCACATCATGAATGGGACGATTGTGAAGCATGTGTGTGAAGAAAGCCCGGATGCAGTTTTTCCAGAAATGGCAGGCTGTAATGCCAGTTTAACAGAAGAACTTACCTCCCTGAAAAGCGATGGTGGGCTACTCCAAGATAACTTCGACTGCATCATAGAAGAGTTAGTAATTGAAGAACCTGATGGTTATAAGCCCCGTTCCGGTGAAACGGAAAGTGGCAATGAAGAGAACGAAGCAGGAGACATAAAGGGGGAGTTGTTCTCTTTACATGGTAACCAACTGTTGGGGGAGGAGAGTGAGGACACCGACCCCACAAACTTGCCTTACTTCCAGCAAGAACTGGAGAACGAGATCGAAAGCCTTTCTGATTCAGAAGGTGGTTTGCACACGGGAACTGTGGACAGCGACGACTTGGGCCTAGAGGAATCTGGGAAACTAGACCGGGAGGATGAGTTGGGAGACTCGTTGCACCAGCTGCCAGGAACACGGAAGAGGCTCGCCTTTGAGAGCAATAACTCggatgatgaggaggaggaggaggatgtgAACCACAGAACTCACCTGGACAGCCTTACTGTGGAAGATGAACTGGAAAATATGTACACCGCTTCGGGAGAAGAGGTCCTCTCTGACGATGACGGTGGGCACAGTGTTCACGTTGAGGCTCACAGTTCTGTGAAGGAAGGCCTTAATGGCAACAGGGATTCCAGTGAGATCAACACTCCTCTGAAAGAAGGTCCCCCAAAAACCTGCTCTGTGTCTGCAGATCAGGGCCAACATGAACCTGTTTTGAGCTACGAGTTCAGTAAACTTCAGTTTACTAGAGGAAAGTCGCCCACAGTGGTATGCAGTCTGTGCAAGCATGATGGACATCTGAAACGTGACTGCCCTGAAGACTTCAAGAGGGTTGAACTTGATCCTTTACCTCCAATGACACCAAAGTTCCTTACAATACTCAACAAAGTTTGCATTCAGTGCTTCAATGATTTTTCTCCAGACCTGATAGAAGAAAAAGCTCGTGAGAACATTCTGCAGAACCTGGAAGACTTAATCAGTTATGACCTGGAAGgAGCCAAATTAAGTTTATTTGGATCTTCTAAAAATGGATTTGGCTTCAAAAAAAGTGATCTGGACATCTGCATGACATTTGAAGGAAGAGAAACCGCAGaggGTCTCCAGTGCATTGGAATAATTGACAACTTGGCTAAAGTGCTCAGGAAGCATCCAGGTCTACGAAATATACTGCCGATTACAACTGCCAAAGTTCCAATTGTAAAGTTTCTGCATGTGAGAACTGGTCTGGAAGGAGACATTAGCCTGTATAACACACTGGCTCTGCATAACACAAAACTACTTGCTGCTTATGCCAATATTGATCAAAGAGTGAAACATTTGTGCTACGCCATGAAGGTGTTTGCAAAAATATGTGACATTGGAGATGCATCAAGGGGTAGTTTGTCATCTTATGCCTACACTCTCATGGTGCTGTACTTCCTGCAACAGAGAAACCCACCCATCATTCCAGTTCTTCAGGAgATTTACGATGGCCCAAAGAAACCAGAGGTACTTGTGGATGGTTGGAACGTGTACTTCTTCAATGATCTAACCGATCTACCAAACCGGTGGCCAGAGTATAGAAAAAACACCGAAAGCGTAGGGGAGTTGTGGCTGGGATTGCTTCAGTTCTACACCGAAGAGTTTGACTTCAAGGAACATGTCATCTGTATCCGGAGAAAGAAACTGCTCACCACCTTCAAGAAGCAGTGGACATCGAAGTACATTGTTATTGAAGATCCCTTTGACCTGAACCATAACCTTGGTGCTGGATTGTCAAGAAGGATGACCAATTTTATCATGAAGGCCTTCATCAATGGGAGGAGAGTCTTTGGTTCCCCAGTTAAAGTCTTCCCCAGTGAATACACTTCTGAAATGGAGTATTTCTTTGATCCAGAAGTGTTGACAGAGGGAGAACTGGCACCAAATGACAGGTGCTGTCGAATCTGTGGAAAGATTGGACACTTCATGAAAGACTGTCCATTGCGCAGAAGATTAAGGCAGAGGCATGACCATCGAGGTCACGAGGATGCTTTTTATCAAAGGCGCCACTATGGAGACAGTGAGATTAGGAGGTCGGATGCTTTGGCCCCAAGATGGAGGGCAGAGAACCAGGTGGCGGGCAGAGAGCAGAACCCCCGACAGGCCTCCGACAAGTGGAGGAAGCAGGACGACCGAGAGTTCAGAGAGAAACGCTGCTTCATCTGTGGTTCCGAGGGACACATTAAGAAAGAGTGTCCTCAGTACAAGGGCTCTTCAGGGAGTTACAGAGCTGATGGCTCCTCCTTTTCTTCATCCCCATCTGCTCCCAGTAATTTAAAGATCTTCAAAGCAAAACAGAGTACAACTCCACAAGAGGATAAGAGAAAGCAGAAGCAGCAGAAAGTATTTCTAAGTCCTCAAGCAGGAAGCCTTGCAAGCAAGCATATGACTCAGGGAAGATCAGCTGAGAAATGAAATCGACAGGACTGAAGAAAAGTGTGTTACATTCAACCCACTTTGATTTGTCTAATTTATAGATGTACTCGTTTTtggattcatttaaatgtataagttAATTGGTAAGCAgtactttaaaaatactttgtttaattaCCTGAGCCAAAGGatggtattttatgttttgaagtTTTTATTCACTCTCCTTCTGaggataacattttaaaattttaaacaaaagccATGATGCATGTTTGTGTACTTTCTAATTTGCTTattgcaacttttttttattattgttattcataaAGATTTTTTTCATGTGCACTATAATGGACTTCCATGTCTACAGAAAAGACAGgaatatagtttaatttatcctttaaaatgtttagacTGTGGTCATAAATGTgcttagtgttttaaaaaaaacaaaaacaaaaaaaaagacaaaaacctgTGCAGATTTAAGTAAGGCGCCTCAAGAAATCAGTGaatttttatgaataaatttttgtctgattttcttttgagtgtttttggtataaaatattaatttgttgagCTTGATTTCCAATGACGCTGTGCTTTTGTTGGATGAGACAAAGAATGTGAGGGTTGCCTCTTGGATGAAATTGCTGCTATAATTAGATTTACTACTGTCTGTGAAACCtgtgacagaaataaaattTCTTaagaaaa

Function

GO: NA

KEGG:

id description
K13291 TUT; terminal uridylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100103 lncRNA upstream 55272 27795510 ~ 27796290 (+) True G80264
TU100068 lncRNA upstream 562706 27288579 ~ 27288856 (+) True G80235
TU100050 lncRNA upstream 648361 27203001 ~ 27203201 (+) True G80217
TU100043 lncRNA upstream 773058 27078289 ~ 27078504 (+) True G80210
TU100041 lncRNA upstream 934723 26916541 ~ 26916839 (+) True G80208
TU100177 lncRNA downstream 68990 27936166 ~ 27937054 (+) True G80331
TU100212 lncRNA downstream 154298 28021474 ~ 28021684 (+) True G80362
TU100254 lncRNA downstream 339145 28206321 ~ 28207268 (+) True G80392
TU100289 lncRNA downstream 394351 28261527 ~ 28262672 (+) False AMCG00010407
TU100364 lncRNA downstream 857831 28725007 ~ 28725281 (+) True G80468
AMCG00010384 mRNA upstream 37989 27810408 ~ 27813573 (+) True AMCG00010384
AMCG00010390 mRNA upstream 56235 27786437 ~ 27795327 (+) True AMCG00010390
AMCG00010383 mRNA upstream 76209 27763580 ~ 27775353 (+) True AMCG00010383
AMCG00010385 mRNA upstream 128191 27710613 ~ 27723371 (+) True AMCG00010385
AMCG00010379 mRNA upstream 303554 27525520 ~ 27548008 (+) True AMCG00010379
AMCG00010393 mRNA downstream 2263 27869439 ~ 27874921 (+) True AMCG00010393
AMCG00010396 mRNA downstream 25434 27892610 ~ 27898498 (+) True AMCG00010396
AMCG00010392 mRNA downstream 52402 27919578 ~ 27933573 (+) True AMCG00010392
AMCG00010394 mRNA downstream 91531 27958707 ~ 28013490 (+) True AMCG00010394
AMCG00010402 mRNA downstream 289080 28156256 ~ 28169012 (+) True AMCG00010402
TU100084 other upstream 294555 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 1457040 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 1825259 26012484 ~ 26026303 (+) True G80014
TU99797 other upstream 1855148 25992558 ~ 25996414 (+) True AMCG00010366
TU99599 other upstream 3014174 24833109 ~ 24837388 (+) True AMCG00010333
TU100109 other downstream 2281 27869457 ~ 27874931 (+) False AMCG00010393
TU100171 other downstream 39321 27906497 ~ 27906829 (+) True G80326
TU100533 other downstream 1627441 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 6036639 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 6834262 34701438 ~ 34707394 (+) True G81496

Expression Profile