RNA id: AMCG00010396


Basic Information

Item Value
RNA id AMCG00010396
length 981
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00010396
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27892610 ~ 27898498 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACTCGTCGGATGACAGTGGAATAGCCTTCTGCTCCAGTGGCACCGACCCGAGCTTGCCTTTGGAAGGAAAAGGAGCCACCCCTGAACAGGGCTCAGGGTGCAATGGGTCAGCTTTCAGTGGGTATCAGAGCCCTCCGCTCCTGGTAGATGCCTGGCTGGTTCCTCTCTTCTTTGCCCTCATCATGTTGGTGGGGCTGGTGGGAAACTCTTTGGTCATCTACGTGGTTACCAAACACCGACAGATGAGGACGGTGACAGCCCAGGCCACGTGTATTACCCTGACTGCCATGAGCGTAGATCGCTGCTATGCCACAGTCTACCCCCTGCAGTCGCTGCGCCATCGCACTCCCAGGATGGCAATGGCTGTCAGTGTGGGCATCTGGATAGGGTCCTTTGCCCTGTCTGTGCCTGTAGCTATGTACCAGAAGTTGGATTCAGGCTATTGGTATGGCCCCCAGACTTACTGCACCGAATCTTTCCCTTCAGTGTATCACCAGAAGGCCTTCATTCTCTATACCTTCTTGGCTGTCTATCTTCTGCCCCTCATTACTATCTGTGTGTGCTATGCATTTATGCTGAAAAGAATGAGCAGACCAGTAGTTGAACCTTCAGATAACAACTATCAGGTGCAGCTTTTGGCAGAGCGCTCCGAGGCCATGCGCACAAAGATTTCAAAGATGGTGGTGGTGATCGTCTTGCTGTTTACCATCTGCTGGGGCCCCATTCAACTCTTCATACTCTTTCAGGCATTTGACTCTAGTTTCAAAAAGAGTTACGAGACCTACAAGATAAAAATTTGGGCTCACTGCATGTCCTACTCAAACTCATCTATCAACCCCATCGTGTATGCTTTTATGGGGGCCAACTTCAGAAAGTCCTTTAAAAAGGCCTTTCCTTTCATCTTCAAACAGAGAGTTGGCAGCACAGGGGCAGCCGCTGTGAACACTGAGATGCACTTTGTTTCATCTGGAACATGA

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0008188 neuropeptide receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100103 lncRNA upstream 96320 27795510 ~ 27796290 (+) True G80264
TU100068 lncRNA upstream 603754 27288579 ~ 27288856 (+) True G80235
TU100050 lncRNA upstream 689409 27203001 ~ 27203201 (+) True G80217
TU100043 lncRNA upstream 814106 27078289 ~ 27078504 (+) True G80210
TU100041 lncRNA upstream 975771 26916541 ~ 26916839 (+) True G80208
TU100177 lncRNA downstream 37668 27936166 ~ 27937054 (+) True G80331
TU100212 lncRNA downstream 122976 28021474 ~ 28021684 (+) True G80362
TU100254 lncRNA downstream 307823 28206321 ~ 28207268 (+) True G80392
TU100289 lncRNA downstream 363029 28261527 ~ 28262672 (+) False AMCG00010407
TU100364 lncRNA downstream 826509 28725007 ~ 28725281 (+) True G80468
AMCG00010393 mRNA upstream 17689 27869439 ~ 27874921 (+) True AMCG00010393
AMCG00010395 mRNA upstream 25434 27851562 ~ 27867176 (+) True AMCG00010395
AMCG00010384 mRNA upstream 79037 27810408 ~ 27813573 (+) True AMCG00010384
AMCG00010390 mRNA upstream 97283 27786437 ~ 27795327 (+) True AMCG00010390
AMCG00010383 mRNA upstream 117257 27763580 ~ 27775353 (+) True AMCG00010383
AMCG00010392 mRNA downstream 21080 27919578 ~ 27933573 (+) True AMCG00010392
AMCG00010394 mRNA downstream 60209 27958707 ~ 28013490 (+) True AMCG00010394
AMCG00010402 mRNA downstream 257758 28156256 ~ 28169012 (+) True AMCG00010402
AMCG00010404 mRNA downstream 293084 28191582 ~ 28206181 (+) True AMCG00010404
AMCG00010401 mRNA downstream 311514 28210012 ~ 28212808 (+) True AMCG00010401
TU100109 other upstream 17679 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 335603 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 1498088 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 1866307 26012484 ~ 26026303 (+) True G80014
TU99797 other upstream 1896196 25992558 ~ 25996414 (+) True AMCG00010366
TU100171 other downstream 7999 27906497 ~ 27906829 (+) True G80326
TU100533 other downstream 1596119 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 6005317 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 6802940 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 7113817 35012315 ~ 35012693 (+) True G81576

Expression Profile