RNA id: AMCG00010400


Basic Information

Item Value
RNA id AMCG00010400
length 1957
RNA type mRNA
GC content 0.39
exon number 12
gene id AMCG00010400
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28232944 ~ 28242085 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCCTCGTCCTTTGTTGCCGCCAGACAAAATCCCAAACTACATTTAAATCCACCCTCACCTCGGCGTAAAGCGTAGCGATTTGGTTTTGTACTTCCGGGCCACCGTACTCCAAGGTTCTGTTGTGAAGTGACGTGAGACTGCAGAAGACACTCAAACAGTTTGCAGGTAGTACTACAGAGATGGCTTCCGCTGTACTGTCCTCAGTTCCCACCACTGCCTCCCGCTTCGCTCTCCTGCAGGTGGACAGCGACTCTGACTCCGACTCCGAGTCTGGAAAGAGCAAGGCAGGCCGGGAGGCCGGCAAGTCCCGCTCTGGAAAGGCAGCAGTTGGCAAATCTGTCAACAgcaatgagaagaaaaaagacaaaaagaagaagaagaaaggacAACAGCAGAGCGAAGCCAACGAGttaagGAGTCTTGCTTTCAAGAAGCTCCCTCAGAAATCCTCCCAGCCACCGCCGGCCCTCAATCTGCAGAACATCGCTGCTGATCTCATCCAGCACAACTCGGGAGATCATCGGGCACCCGAGGCCAATTGGCAGCAGTGGAAACAACGAGATGAACAGTTAACACATGATCTTTATGAAGCGGATCTGGAAAAAGCCTTAATTTTAAGCAAGTTGGAATATGAAGAACATAAACAGGATTTTGAAACTGTGGATACTACCTCACCTAAATCCAAAGGTGGAGGGAAGAAAGATAAAAGAAAGAACCAACAGGGTAAAGACAAACCCCTCACAGTATCCCTAAAAGACTTTCAGACGGAAGCAAATACAGATCATAGTAATAAGAAACCAGAAgaaacaaaacCTATAAATGCAGCCACCCAAGATGACAGGTTTTTCAATAAACTGGAAGATGACGTCAGCAAAATCTTACTTAAAGAGAAGAGACGAGAGCAGTTCACTGGCAACAGTGGCATTGAAATCCCTATACCTATAGAGCATGAAACGgaTGTAAGAAATGAACAACTTAAATATGAATTGGAAAAGAAAGACTTGGAAATAGAAAAGTTAAAGAAGATTATCTCACAGTGGGAGGGGAAATATAAAGAAGTGAAAGCAAGAAATGCACAGCTTTTGAAGATGCTTCAGCAAGGGGAAAtgAAGGATAAAGCAGAAATTCTTCTACAAGTTGAAGAGCTGATGAATATAAAGGAGGAGCTATCATCACAGgtCACTTCATTGCATGCAGCTCTTGAACAAGAAAAGTCTAAAGTAAAAGGATTACAGTCAGATCAGCCTAGGCATCATCAGggAAACAAGAAAGGCAAAAAGAACTCTGAATCTGATATATGAAGACCTATAAGGGACAATTCAGCAAAAAAAAGACTTATCTTCAGGGtttcatcatttaaaatgtacagaacacCCAAATGGtttaacaaacaattaattttgttgAGATTATTTGGTTGAAGATTCAAACCTTGTTGTTAAAGGGTTCTGattttcaaggtttttttttctttgtaattactTTAAACAAGTTTCATCTGActgttttacagaaataatatatacacagtattatTGCCATTTCTAAACAATAATCTAAGTATATTTTGGAGCATCATATTTTTCAGATCGCATTGGTATTTTAGTTGGTTTCACTCTTACAGAATCCACCTTTGATGGGTTTAGTTATTGTAACCCCAAATCAGAACCTTAcgttctttttttgttgttaattaaaTCTTATACTAATAAAAGTTTCTAAATGTCCCTAATcctataataatgataattctGTCCTTTTGTTTATCTACTGTTGAAATGCCAAAACATGTAATGCAAAGCTCTTTTTAACTGCAAAGTAAATAGACTACTTTTCCAGTGTCAAGTCTgatgtttgtttcttgtgtacctaatgcacatttaaaaaaagggtcAAATATTCTCCAAACGATTTATTCAATCTTCTACCAGACCTCACACTTTAAGTGGGTGTATG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005794 Golgi apparatus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100254 lncRNA upstream 25676 28206321 ~ 28207268 (+) True G80392
TU100212 lncRNA upstream 211260 28021474 ~ 28021684 (+) True G80362
TU100177 lncRNA upstream 295890 27936166 ~ 27937054 (+) True G80331
TU100103 lncRNA upstream 436654 27795510 ~ 27796290 (+) True G80264
TU100068 lncRNA upstream 944088 27288579 ~ 27288856 (+) True G80235
TU100289 lncRNA downstream 19442 28261527 ~ 28262672 (+) False AMCG00010407
TU100364 lncRNA downstream 482922 28725007 ~ 28725281 (+) True G80468
TU100365 lncRNA downstream 529142 28771227 ~ 28775463 (+) True G80469
TU100387 lncRNA downstream 635739 28877824 ~ 28878359 (+) True G80487
TU100390 lncRNA downstream 658084 28900169 ~ 28994462 (+) True G80489
AMCG00010403 mRNA upstream 479 28215856 ~ 28232465 (+) True AMCG00010403
AMCG00010401 mRNA upstream 20136 28210012 ~ 28212808 (+) True AMCG00010401
AMCG00010404 mRNA upstream 26763 28191582 ~ 28206181 (+) True AMCG00010404
AMCG00010402 mRNA upstream 63932 28156256 ~ 28169012 (+) True AMCG00010402
AMCG00010394 mRNA upstream 219454 27958707 ~ 28013490 (+) True AMCG00010394
AMCG00010407 mRNA downstream 904 28242989 ~ 28265443 (+) True AMCG00010407
AMCG00010408 mRNA downstream 61207 28303292 ~ 28334876 (+) True AMCG00010408
AMCG00010409 mRNA downstream 97795 28339880 ~ 28371632 (+) True AMCG00010409
AMCG00010410 mRNA downstream 134757 28376842 ~ 28389169 (+) True AMCG00010410
AMCG00010411 mRNA downstream 154582 28396667 ~ 28399391 (+) True AMCG00010411
TU100171 other upstream 326115 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 358013 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 675937 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 1838422 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 2206641 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 1252532 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 5661730 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 6459353 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 6770230 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 7228250 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile