RNA id: AMCG00010401


Basic Information

Item Value
RNA id AMCG00010401
length 1587
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00010401
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28210012 ~ 28212808 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaattaattgccAAATAAAACTTTCAGATGAAGGATGTGAATGCAGactaaaactgtattttataacatttatagATCAAATGGCATTTTCTAGATGTTATTTGTTGGTCTTTGTTCTCTAGTGTCAGAAAAATGGAAGCGCCTTTATCTCCAAGAGAATCTGGAAAGTTCATAGCAGAGAACAGCAAAGATGTCTTTATTGATGAAGAGGGGGTGAAAAGGGTAGCAGAGATGCTATATGAGAAAAGAGATAGTGAAGAATTCACAGCCAAAGGTTGGAAAAATATGAACCCACTGGCTCCTTCCTGGAATACTGATGATGCGATAAACTGGGTGTTTGTGGTGGACACTATGAACTTCTCCTTCTGGCCAGATAAAGAGGACCAACAGTGTACAGTGACATACAAGGATAAAACATACACTGGATACATGACACTTTGTGCTGCCATCACCAGAGCAATGGATGAAGgCATTCCTATCACACATGCATCctattttgcaaatatgactCTGGACGATCTGAAACACGTGCTGCGTTCCGACAATGACATTCCAATGCCAATGATCGAGGAACGGCACAGAGTACTCACTGAGGCAGGGAAAGTGCTGCTGCAATACGACGGGTCTTTCCTGAAGTTTATGAGTAGAGGCCACAACAGTGCTGAGAAAATGGTCAAGCTCATTGTCGACAGTTTGCCATCTTACAGAGATGAGGCCACTTTTCAGGGAAAGAAGGTTTCCTTTCATAAGAGAGCCCAGATCCTTGTTGCAGATTTCTGGGGCATCATGGAAGCCAGAGGAGAAGCCTGCATTCCTGATCTTAACTTCCTGACCATGTTTGCAGACTACCGGATTCCTCAGGCTCTGGTCTACCTGAAAGCACTCGGATACTCTGATGAGCTGATGAAGGCCCTCAAGGAAGGGGTGATATTGCCATCTGGAGACTGCAGGGAAGTAGAGATCCGGGGCTGTTCCATTTGGTGTGTGGAGAGGATCAAGATGGCCTTGTGGGATTTAACTGAGCAGAGAGAAGGACGCAGACTTGAAGATATAAATTCTGCCATTATTGATTTCTTCCTATGGCCCTATGCCAAAGAACACCATATGGAAATGGCTCACATTCCCATCCACCACACACGCTCCATTTACTATTGAGTGAGGCAAGTCTTCCCTCTGCCTTTATCACTGCaaaactgtaattacatttcacttattgctattaatttaatcaaaaaatCCCCAgtataaaaaagaagaaaacagccCAGTTAGAAAGAgatcaataataatcaaatacaaatgtgacatCTGTCAAAAGGCCACATAAAGATGAGTTGCTTTGTCTTGCATTCAATCATTTACCTAGCGCTGGCAGCTCACACTCATTCAGAAAGTCTGCTGTGTTTCAGTCTGATTTACACAAACGTTTGGTTTTGTGAGATGTTTCACTGCAGCCTTTATTCTAACTTCGACAACTCGAGATCTTTTCAATTGTGGAATAAAGGCTGGAGTACAAtccataattttaaataatgtattttatgctaaatgggaaaataaatatatgggaACAATAAACAAGTGTTT

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03030 DNA replication
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100254 lncRNA upstream 2744 28206321 ~ 28207268 (+) True G80392
TU100212 lncRNA upstream 188328 28021474 ~ 28021684 (+) True G80362
TU100177 lncRNA upstream 272958 27936166 ~ 27937054 (+) True G80331
TU100103 lncRNA upstream 413722 27795510 ~ 27796290 (+) True G80264
TU100068 lncRNA upstream 921156 27288579 ~ 27288856 (+) True G80235
TU100289 lncRNA downstream 48719 28261527 ~ 28262672 (+) False AMCG00010407
TU100364 lncRNA downstream 512199 28725007 ~ 28725281 (+) True G80468
TU100365 lncRNA downstream 558419 28771227 ~ 28775463 (+) True G80469
TU100387 lncRNA downstream 665016 28877824 ~ 28878359 (+) True G80487
TU100390 lncRNA downstream 687361 28900169 ~ 28994462 (+) True G80489
AMCG00010404 mRNA upstream 3831 28191582 ~ 28206181 (+) True AMCG00010404
AMCG00010402 mRNA upstream 41000 28156256 ~ 28169012 (+) True AMCG00010402
AMCG00010394 mRNA upstream 196522 27958707 ~ 28013490 (+) True AMCG00010394
AMCG00010392 mRNA upstream 276439 27919578 ~ 27933573 (+) True AMCG00010392
AMCG00010396 mRNA upstream 311514 27892610 ~ 27898498 (+) True AMCG00010396
AMCG00010403 mRNA downstream 3048 28215856 ~ 28232465 (+) True AMCG00010403
AMCG00010400 mRNA downstream 20136 28232944 ~ 28242085 (+) True AMCG00010400
AMCG00010407 mRNA downstream 30181 28242989 ~ 28265443 (+) True AMCG00010407
AMCG00010408 mRNA downstream 90484 28303292 ~ 28334876 (+) True AMCG00010408
AMCG00010409 mRNA downstream 127072 28339880 ~ 28371632 (+) True AMCG00010409
TU100171 other upstream 303183 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 335081 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 653005 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 1815490 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 2183709 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 1281809 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 5691007 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 6488630 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 6799507 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 7257527 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile