RNA id: AMCG00010402


Basic Information

Item Value
RNA id AMCG00010402
length 3758
RNA type mRNA
GC content 0.38
exon number 17
gene id AMCG00010402
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28156256 ~ 28169012 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGGGCATACACGTGCTGCTGGTGCTCTAGATTATGAACTAAATccattaattttacattatacagtttaactCCTCAGAATGATTAATTCCATGTTTAGCCTTTCTATTTTTGGGAGGATTGtatcctttaaataaataacttctaTCTTTCAGCTGAACCAGGAAGCAGAACAACattacacaataacacacacacacacattgtgtttACATGCGTTGGCACTGTGAAGCTGGAACCTCCCTTCTACATGGTATAAAGTTTCTCGGGAACTGTTCCTTCTTTTTATTCAAGTTATTGCCATGGAGCTTAATGAAGCAGCCCCTTCCAAAGACAGCAATCAAAAACAGGGAGCCACCAATCCTGCTTTTGAGGATTCTGTCAATACTGATTTGGACAACAACCAAGATTCACCAGTAGGGGAGAATGGAAAACTGCAAGAGCCTAAGAAAAGGTTCTTGGAAAAGAAATTTGACATTGTCTTTGGAAAGTTTGAGaaacacaggacacgtttcaaATATGCCTTTTATTCAGTTCTCCTGGCAGGTTACTTCGTGATGGTGATTGCCGCCTGTGCCTTAAACTTCCAGAGAGCTCTGGCACTCTTTGTTCTCACTTTGGCTGCAATATTCTTTTTCTGCTGGGATAATCTAATGGCAAGATATGAAGATAAAATTGTGATGTTTCTCCAGCCTCCTAAAAAGCTTCTTAAGAAGCATTGGCACTGGTTGAAATGGTAATGGTAATACTTCTGTTACAGTCTGGAACAATTTGCTTTTCACTTTCACCACACTGTAATGTCTTCTTTACACCATGTCCTGCATTATACTGTTAACCAGTCTTGATCCTGCAAGAGATTATAACTTCTTCTTAAACTGCCCAAATGGCACACCCTTTAAAGgaacattaatcattttttgtcattttaccaAGCACGGAAATGTGCAATAATTTCACAAGTTTAGTACATATGACTAAACCTTTATGAAGACTAATTTCATTATAGGTCATTAGTTGATAGCCTCTGTCCAATTATTACATGTAATATAATGTCATTATTTGGGAATGTTGTGCAGTCTAATTTCTGTATTAGATTTTTGTGAAAGTGTTCTATTTGTAAGATTAGTACAGATTTGTCTTCCGACCTAGAGGAATcaagtattttgaaaaacaatcataGCTCATATGTTTCTTTCCCCTTTTTGGTTCTCCAGGGTAGTATATAGTGCACTTGTTTTGGCAGTAATATGTTGGCTTGTGATTGACACAGCAAAGCAAGGTACTAACCAACTTATATCCTTTGGCGGCCTTGtcatgtatataataattatgtgcATCTTCTCAAAACATCCATTCAGGGTATCATGGAGAGCTGTTTTCTGGGGTCTAggattgcaatttatttttggacTTATAATTCTAAGAACTAAAGCTGGGTTTGATGCCATAAACTGGCTTGGCACACAAGCAGAGATTTTTCTTGGCTACACTGACGCTGGTTCAAAGTTTGTCTTTGGTGACACATTTACAGACCATTTCTTTGCATTTAAGgTTCTGCCAATAGTGGTATTTTTTAGCACTGTGATTTCCATGCTTTACTATGCTGGTTTCATGCAGTGGCTGATATTAAAGGTTGGCTTCATAATGCAAGTCACTATGGGAACTTCACCAACCGAGTCAATGGTTGCTGCTGGAAACATATTTGTCGGGCAGacAGAATCTCCATTATTAATCCGTCCTTATATATCGGACCTTACAAATTCTGAGATCCATGCAGTGATGACAGGGGGGTATGCCACTATAGCAGGAAGTGTCTTGGGAGCCTATATTTCATTTGGGATCCCCGCTTCCCATTTATTGACTGCGTCTGTGATGTCAGCACCTGCGGCTCTCGCCATAGCCAAGCTGTCCTGGCCTGAAACCGAGATACCAAAGATCACCACAAAAACAAGACTCAAACTGGAAAAGGGTGAAGGAAGTAATTTATTGGAAGCCGCTACACTTGGGGCCTCGGCCTCTATTCTGTTGGTAGCTAATATTGCTGTCAACCTGATAGCATTTCTGGCTCTGCTTGCCTTTTTGAACGCTGCATTATCTTGGCTTGGAAATATGTTTGACTACCCACAACTAACCTTTTCGctGATTTGTTCCTATGTCTTCATGCCCTTTTCGTTCATGATGGGAGTGGATTGGGAGGACAGCTTCCTGGTGGGGGAGCTCATTGGATACAAAACCTTCTTCAATGAGTTTGTTGCCTATGAAAAGCTGTCAGTCCTTATACATAAGAGACTGGAGGGGGGGCCGGAGTTTGTGGATGATGTAAAGCAGTATCTCAATGTTCACTCTGAAATTGTAGCCACCTATGCATTGTGTGGGTTTGCAAATATTGGATCATTGGGAATATTGATTGGAGGCTTGTCTTCCATGGCTCCAGAGAGGAGAGGTGATATAGCCAGGTGTGCTATTAGAGCTCTGATTTCTGGGACTGTTGCGTGCTTCATGACGGCTTGTGTTGCAGGAATATTGTACATCCCTGTTGTTGAACACATACCATGCACCATATTCCTTGAAAATGAATTTAACTCAACGTCaccaagaaacagcacacaGCTGTTGAACTGTTGTTTTGATCTTTATGACAACTATAACAgCTCAGTACCCAGTCTCGGGTCCCTCAGAAACTGCTGCGCAATGGTGAATTCTACAACATTTGACTGTGGTCCATTCCTGAGCTGAGGAACGGGTTGATTCTTCACTCCATGATGTGACACACTGTTTTTTCCTGCAATCTCCATTCCCAGACTACCTTCACTTATTGTATGAAATGAATTTGTAGCTGATATACCAATATTTTAGAGAGTAATATTAATGTTTCCATATACTGTTTCAGGCTCAGTTTCCTATTATGAACTTATAAGATTCAATTAATAAGACAACCTTTGTTAAAATCCATTAGCCAGCTCTGAAACTGACCAAAAGTACTTTGTGAAGTGTTGGAATTTCTGTTCAGCACGATTTATTTTCTACTCCACATTTACACATGCGtctttgcaatttaaattaaagctctttacattgtataaatgttttctttccaatCCAGCAGGaagacattacaataaatacTTAAACTACCTGTAATTATGTAGAGTGAAGGGAAATATATTGGTAAACAGCGTTCATTGAATTTGTCTTCAGCTTTAAAGAATCAATTAGACTATGTAGTTTTGTGGTTTAAACTGGTactgatattttaaattccattcCAATATACCCTATTATGtaattgtgtaaatatatgtaatgcatCTATAATTGAATCATGTAATGTAACTACAGCTTGTATTTCATTTAGCAAAGTGAGCCTCCATCAATAAATATGTCAACCACTACTACTCACAGTGCTGTggcttgtaataataataataataataataataataataataatagtatatcaCATATGATAAAGgaagtgaaataaaacaggTATAACATGTTGATAAACATTTTTTGCTAAAACTGACTGCCTCACAGATGTTTTTCTTACAGAGCCGTACTTTTAGCAGCTAATAATGACATGTTCAGACTCTTTTGAGGTCTGTGTCACTGGCTGGCCACTGTGAGCCCTGTAGATCTGATCATCCAGATTTTTTGTCATAGcatctttaataatttacttttcaaaCACAAGAGGGCGATGTTGTTTCACACACTGCATTTGATCAAAGGACCAAAtgacaaatgcttttttttt

Function

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005415 nucleoside molecular_function
GO:0001882 nucleoside binding molecular_function

KEGG:

id description
K11536 SLC28A; pyrimidine nucleoside transport protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100212 lncRNA upstream 134572 28021474 ~ 28021684 (+) True G80362
TU100177 lncRNA upstream 219202 27936166 ~ 27937054 (+) True G80331
TU100103 lncRNA upstream 359966 27795510 ~ 27796290 (+) True G80264
TU100068 lncRNA upstream 867400 27288579 ~ 27288856 (+) True G80235
TU100050 lncRNA upstream 953055 27203001 ~ 27203201 (+) True G80217
TU100254 lncRNA downstream 37309 28206321 ~ 28207268 (+) True G80392
TU100289 lncRNA downstream 92515 28261527 ~ 28262672 (+) False AMCG00010407
TU100364 lncRNA downstream 555995 28725007 ~ 28725281 (+) True G80468
TU100365 lncRNA downstream 602215 28771227 ~ 28775463 (+) True G80469
TU100387 lncRNA downstream 708812 28877824 ~ 28878359 (+) True G80487
AMCG00010394 mRNA upstream 142766 27958707 ~ 28013490 (+) True AMCG00010394
AMCG00010392 mRNA upstream 222683 27919578 ~ 27933573 (+) True AMCG00010392
AMCG00010396 mRNA upstream 257758 27892610 ~ 27898498 (+) True AMCG00010396
AMCG00010393 mRNA upstream 281335 27869439 ~ 27874921 (+) True AMCG00010393
AMCG00010395 mRNA upstream 289080 27851562 ~ 27867176 (+) True AMCG00010395
AMCG00010404 mRNA downstream 22570 28191582 ~ 28206181 (+) True AMCG00010404
AMCG00010401 mRNA downstream 41000 28210012 ~ 28212808 (+) True AMCG00010401
AMCG00010403 mRNA downstream 46844 28215856 ~ 28232465 (+) True AMCG00010403
AMCG00010400 mRNA downstream 63932 28232944 ~ 28242085 (+) True AMCG00010400
AMCG00010407 mRNA downstream 73977 28242989 ~ 28265443 (+) True AMCG00010407
TU100171 other upstream 249427 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 281325 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 599249 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 1761734 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 2129953 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 1325605 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 5734803 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 6532426 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 6843303 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 7301323 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile