RNA id: AMCG00010404


Basic Information

Item Value
RNA id AMCG00010404
length 2763
RNA type mRNA
GC content 0.42
exon number 12
gene id AMCG00010404
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28191582 ~ 28206181 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTCGGTGTTGGGAGTGGAAGGCAGAACGGGGTCTGCAAGCAGGTTTTAAGCAGTTCTTGGAGACCTTAGTAGTCCCCGCCCACAACACGCCCATTTAACCACAATAAATAGTGCTGTTTCACAGAGAGAAGAGCCCGATTTCATTTCAGCTTTGTTAGAAGACAATGGAGACTGAAATTGAACAGCAGGAAGAAGAGACTACTTTCAGCAACACAGAGACAAACGGAAAGCGCCCAGCTGAGGACATGGAGGAAGAACAGGTCTTTAAGAGGTCTCGTAATACTGATGAAATGGTGGAACTGCGTGTCCTGCTTCAAAGCAAAAGTCTGGCAGGGGGCATCATTGGGGTCAAAGGAGCCAAGATCAAGGAGCTGAGAGAGAACACTCAAACGACAATCAAGCTTTTTCAGGAGTGTTGTCCTCATTCCACGGATCGTGTAGTTCTTGTTGGAGGAAAACCTGACCGAGTAGTGGAGTGCATTAAGATCATCCTGGAGTTGATATCTGAGGCTCCAATTAAAGGTCGTGCTCAGCCTTACGACCCAAACTTCTATGATGAGACTTATGACTATGGCGGTTTCACCATGATGTACGATGACCGTGGCCGGCGTCCTATGGGTTTCCCAATGCGTGGCCGAGGGGGCTTTGACCGGATGCCTCCCGGCCGGGGTGGGCGACCTATGCCTCCATCGAGAAGGGATTATGATGATATGAGTCCCCGTCGAGgaccaccaccacctcccccGGGCAGAGGGGGCAGAGGGGGCAGCCGAGCCCGAAACCTCCCTCTGCCGCCGCCACCACCTCCCAGAGGAGGAGATGAGCAGTTTTCCTACGAGACCTTTCATGCCAATGCAGACGACGGACCAAATAATGATAGAAGAGGGAGACCTGGTGATCGCTATGACGGAATGGTGGTCGAGGGTCCTATGGTGACATCGGAGGGCCTGTTATCACAACGCAAGTAACCATCCCCAAAGATCTGGCTGGATCAATTATTGGAAAAGGAGGTCAACGAATCAAGCAAATCCGACATGAGTCTGGAGCGTCAATTAAAATAGACGAACCTCTGGAAGGATCTGAAGATCGCATCATTACCATAACAGGCACACAGGACCAGATCCAAAATGCACAGTACCTATTGCAGAACAGtgtGAAGCAGTACTCTGGTCGGTTCTTCTAAAGGAGGAGAGTAAGATTGAAGGAATACTGCGCTGCTTGTTTTGTCCCTGCTTCTGTTAAAAGAGCCAACATTCCTCTGCTTTAGGTAGATGTTCTGCATTTGGGGTGTAGTTCAAATTCTGCTTCTTTTTCCATCtgatgtaacatttttaattcttaGAGAACTTAAACTAAATGttcaaaacagcagcagaatgagtggattcttgtttttttttgttttgtttttttgttaaacttgTTTTGATGGattattgtaatgtgttttctgtaattAGAGTAAACTCATCTGTATGTACACTGTTTGTATGGGCAAAAGTACTGGTAGCTGAAATGTGCCAGACATCCATTCAGTACAATGTGCGGAATGTAATCTTGTTTTGTAAGgaacattttatgatttttaaaataaatttagtAAATTGTACTTTCTTGCTATTTTTCAGTTAACTAAAGGCTAGGGGCtgtataaagaaatgtaaatatacagtaatgATTTCTAAGACTTTTATAGAATTTGAATTTgcataaagatttttttttctctgtgggtTATATTCTAGTGTACTGATTGGACCAAAAAGTGGGAGATAGTCGGGGGGGGTGTCTTTAGAGCCCATCAGTCATGTTAGATGTGTAATCAGCATTCAGCAGTGTATTGAGCTCATTGcctgttttaaatacatgccCCATATAAATAGGATTTGATCATTTATGTAGTgcacaagtcttttttttttcttcacaaacacTTAGATTTAGACAAAATCCATTGGTCTTGCTGAAGCCTGTTTTCTACTTGTCTATGTGTAAGCATTTTTAAAGTATACGATAGTCTTTACACTTACCATTCAGTCAGTTTATGCAGTATGATTATCTTCAGATGTGCaggccttttttgttttgccagaAGTTTAGATGTACATCATTCCACCCTTATTTCCTTCTGAAGTCCTGCTGTAGAATCTGCTGCAAGTCTCCGTAATAAAGCAAATGCCACCTTTtaataaatgcacttttttgGGGATGGTTAAAATGCCATATTCTATTAAATCTTGTATTCCTGCAAAAGTTCATTTGGGAGAATTGTAACCTAATTGGTAAGTAAATGATGACGTTTTACTATGTCCAGTTTgattttcttgtgtttcttcAATATTAACAATTCTGAGTCTTCACTATCTTAATTCATTTATGAGCTAAAACAATTGCTCAAATATCATTATTAGGTCTTCTTAAATCTCTTCACCCAGCTCTGAATTAAACCTAAGAGTGTTTCCTCGTCTGCTTATGGGAATATATGACTTTCCTTAGTTTCTCTGCCTGGTGTGCCAAGTCAGTGACATCGTGATCAACTCTCCCTGTGCACAAAGCAGGGGGAAAGGGCTTTATTCTATGCAGTATAATTTTGAGCGAAGAATATGAAACATTTGCTTTCTATTGCGGATAATCTGTTTTGTTAAGAATTGAGTTTCAAAGGTGTTCTTAGTGCATTTACTTCCACTGTTGATTGGTCAAATTGACATTTCTAAGGGGGAGATCTTCTCCAGCAATACCTCTCAATACTCTGAATTGTAA

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12886 HNRNPK; heterogeneous nuclear ribonucleoprotein K

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100212 lncRNA upstream 169898 28021474 ~ 28021684 (+) True G80362
TU100177 lncRNA upstream 254528 27936166 ~ 27937054 (+) True G80331
TU100103 lncRNA upstream 395292 27795510 ~ 27796290 (+) True G80264
TU100068 lncRNA upstream 902726 27288579 ~ 27288856 (+) True G80235
TU100050 lncRNA upstream 988381 27203001 ~ 27203201 (+) True G80217
TU100254 lncRNA downstream 140 28206321 ~ 28207268 (+) True G80392
TU100289 lncRNA downstream 55346 28261527 ~ 28262672 (+) False AMCG00010407
TU100364 lncRNA downstream 518826 28725007 ~ 28725281 (+) True G80468
TU100365 lncRNA downstream 565046 28771227 ~ 28775463 (+) True G80469
TU100387 lncRNA downstream 671643 28877824 ~ 28878359 (+) True G80487
AMCG00010402 mRNA upstream 22570 28156256 ~ 28169012 (+) True AMCG00010402
AMCG00010394 mRNA upstream 178092 27958707 ~ 28013490 (+) True AMCG00010394
AMCG00010392 mRNA upstream 258009 27919578 ~ 27933573 (+) True AMCG00010392
AMCG00010396 mRNA upstream 293084 27892610 ~ 27898498 (+) True AMCG00010396
AMCG00010393 mRNA upstream 316661 27869439 ~ 27874921 (+) True AMCG00010393
AMCG00010401 mRNA downstream 3831 28210012 ~ 28212808 (+) True AMCG00010401
AMCG00010403 mRNA downstream 9675 28215856 ~ 28232465 (+) True AMCG00010403
AMCG00010400 mRNA downstream 26763 28232944 ~ 28242085 (+) True AMCG00010400
AMCG00010407 mRNA downstream 36808 28242989 ~ 28265443 (+) True AMCG00010407
AMCG00010408 mRNA downstream 97111 28303292 ~ 28334876 (+) True AMCG00010408
TU100171 other upstream 284753 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 316651 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 634575 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 1797060 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 2165279 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 1288436 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 5697634 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 6495257 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 6806134 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 7264154 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU284914 False 1127 lncRNA 0.38 2 CI01000059 1056252 ~ 1062858 (+)