RNA id: AMCG00010409


Basic Information

Item Value
RNA id AMCG00010409
length 2797
RNA type mRNA
GC content 0.42
exon number 10
gene id AMCG00010409
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28339880 ~ 28371632 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCGATACAGCAACAAAGTCCTGCAGAAGTTTGTAAGGCGCTGGAAATGCGCTCTCATTTACTGGAGGTTGTTTACTGACCTTGAAAACAACacagGTTTGTTGACAGGAAGGCAAGCATGGCAGCTTTGCTCCCTCCTGAGGACCACGCCTCTTCATCACCACAAAATCAGaaTCAGCCGTTCACTGCAAGAACAAAGAGACGTCTGCATGCTGAGACTGTGTTTCCCACAGACAGTCCAAGAACACGGGACCTGAAAACTCTGAGAGCAAAACGTCTGGCGTACTTCATGAAATTAGGGAAAAAGCCAACTACAGCTAGTGAAGGGGGAGTAAACGAGACTAATTGTGGTACAGTGCTGTCAAATTCAAACACGGCTACTGATCTGAGCAGTACTGGCCTTAAGGACTTCTCCGACTGTTTGACAGAGAAGGATCAAAGTGATCACAGTCCAATCCAAGATTTGGGAATTTGTCTCCATAAAGAAACAATATTGGATAGTCAGTCTCTTGCAAGAGGAAGTGCTTATGATCTTGACTATCATTTGCTACAGGACACACAGGTTCCAGAAAATCAGAAGCTGAGACATGTTTTAAGCTGGGctcagacatttttaaacactcCATTTAGTGATGAGAGTGATGTCATAAAAAACCCAAGTACAGTTGGTAGTAAACCATCTATGATTTGTAAAGATCATGAGCCTTCAGGTTTATTGAGTTCAGGTGAGGTTAACAGCAGCACACTCAGTGAGAGTAACATAAGCTCTTCTAGCAGTGACCAGATGAGAGATTGCCCACCTGCTACACCTAGTCTATTCATTAGTCATATGCCAGAGGACTACTATTTACAATACAGTGAGTTtgatacagagaaaataaagatcGCTGACCAGGAAAAAATCAAATGGACATATAGGGACAGTGAAGACAAATCACCTGTTTTCCCTGTTGCTAATTCTTGCCTGAATCAAGCAAGTTGTGACAGTTCAGCCCGTACTGCTCTTGaaccttcattaaaaaaagagacgGTGATGAATGGGCATAGGTCAGCAGATGCACCAGGTAGACAAACCTACAGGCTGTCAGAAACTACCTCTAGGTGGCATTTACAGCTTCCCTCCTTGGAAACGAAGGAAGATAATGGCACAGCCCCTGTAGGGCATACTTCAAAACAGAGCTGCTGGGCTGATGAGATTGAAGAAAATGGTGCTAGGATTAATGATCCAAGGAAACAATTTGAGGAAATTCCTGGGTTCAACTTTTTTAACAAATCACTGCCAATGGATGGGAATCAAGGACAACGCACAGAGATGAAGACTAATTCAACATATACAGCAGAGGTAGAAGAAATTAAAGATGGCACAACCAGAAATGGCAACGAGATGTATGCTTTGTGTTCAGGCAACAAAGTTGAACAATTTGCCCACTGCACAAACAAAAAGCCAAACAGTGATACTGAACGAAACGCACAAATTGCCATAAACTCCCATGTAGACCTATCATCTGATTTAAGTGTTTATGACAAATACCTCATGTGTGTCGACCATCTCAATAGCACAAAAAAGCAGTGCAGCAGAAAAGGGACTGAACTGGAGTGCATTGATTCTCTAGCAGATGGATATGGGAAATCTGAAAGTAAATCTGCAAATATGagtgaaaatgcatttctgcagcagcaggaatccagaaaaacaaaacagtcaaatgcTTGTGATCTGGATTTTGAAGATAGCAGAAATCTTGGTTTATCCTTCTCGTCGGAGGACAATGTTGTTACTTGTGAAGAGAATGTAGTTATGCCTTCTGTTCAGAATGCTACAGAGCAAACTGCACCATCTCAGTTCAGAAGTGTTGCTGAGAAAACGTTTGATCATGGTGAGAACCAAAGCAGAGCACAAATGCCCAGCAAATCAAAAGTAATTAAGCCCAAAAGGAGTCAAAACAATGGTCCCAGTCTGGCAGGCAGCAAAAGATACTGGAAGAAGTCAAGTATTGCCTGGTCATCTTATGGTCCTGGGGAACTAAAGCCAAGGTTGGAGATGTTTGGATGCCATGCCCTCAGTGCAAAGTGCATGCGCTCCTTGGCCGATGAATGTCCTAACCTGAAAGTCTTGAACATTGGTCAGATACCAAAGATTACAGATATCTGTCTGGCACATATGATTCCCCGCTTCAAACATCTAACATGGCTTAATGTGACAGGCCTGAACGTGGTACGTGACCGGACTGTCCACTACATCGCAAGGCACTGTCCTAAGATGGACAGTTTGATTCTGAGTTCCTGTCCCTTAGTCACTGATGTCAGCCTGGTTGAAATAAGCACGTATTTACCCACAATTAGGTATCTGGATGTAAGCGGCTGTAGAAAAGTGACTGACACTGGAGTGCAGGCAATTGCTCTGACTTGCCACCATCTACAGTACCTTGACCTCAGCTCAACAGGGGCTGCAAAGCGAGGATTGAAGCTGCTGCACCTCTATGGCTGCCACAGTATCCGCAATGTGAAGGACATCAGGGAAATCAATCACAAGGTCGAAGTGCATCATGACCTTTCACTCAGCACATCGTACCAAATAAGGGAGTGAACTGATGGCAAAACCCTGCTTTTTATCAAAAAATCTTAATACGTTGTCTttcaaaataatcttaaaaatgtctttataatCATATAAGTGTCTCTATAATTCATGGATGTTTATACAAGTATTCTAAACAAACCAATCTGCagtttgtgatttaatttaagcaGGATATTTTTCACTCCTACTGTCTTAGCATTGTTATATTACTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100289 lncRNA upstream 77208 28261527 ~ 28262672 (+) False AMCG00010407
TU100254 lncRNA upstream 132612 28206321 ~ 28207268 (+) True G80392
TU100212 lncRNA upstream 318196 28021474 ~ 28021684 (+) True G80362
TU100177 lncRNA upstream 402826 27936166 ~ 27937054 (+) True G80331
TU100103 lncRNA upstream 543590 27795510 ~ 27796290 (+) True G80264
TU100364 lncRNA downstream 353375 28725007 ~ 28725281 (+) True G80468
TU100365 lncRNA downstream 399595 28771227 ~ 28775463 (+) True G80469
TU100387 lncRNA downstream 506192 28877824 ~ 28878359 (+) True G80487
TU100390 lncRNA downstream 528537 28900169 ~ 28994462 (+) True G80489
TU100392 lncRNA downstream 584640 28956272 ~ 29023473 (+) True G80491
AMCG00010408 mRNA upstream 5004 28303292 ~ 28334876 (+) True AMCG00010408
AMCG00010407 mRNA upstream 74437 28242989 ~ 28265443 (+) True AMCG00010407
AMCG00010400 mRNA upstream 97795 28232944 ~ 28242085 (+) True AMCG00010400
AMCG00010403 mRNA upstream 107415 28215856 ~ 28232465 (+) True AMCG00010403
AMCG00010401 mRNA upstream 127072 28210012 ~ 28212808 (+) True AMCG00010401
AMCG00010410 mRNA downstream 5210 28376842 ~ 28389169 (+) True AMCG00010410
AMCG00010411 mRNA downstream 25035 28396667 ~ 28399391 (+) True AMCG00010411
AMCG00010414 mRNA downstream 189514 28561146 ~ 28582925 (+) True AMCG00010414
AMCG00010424 mRNA downstream 676554 29048186 ~ 29060040 (+) True AMCG00010424
AMCG00010423 mRNA downstream 723705 29095337 ~ 29107346 (+) True AMCG00010423
TU100171 other upstream 433051 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 464949 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 782873 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 1945358 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 2313577 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 1122985 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 5532183 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 6329806 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 6640683 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 7098703 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile