RNA id: AMCG00010410


Basic Information

Item Value
RNA id AMCG00010410
length 1458
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00010410
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28376842 ~ 28389169 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGAAGAAGAGGATCTGGACACACTGCGCTTTCTGTTTCACGCCTGTGATCTCAATAATTCGGGGCGAATTGAAAAAGAGGAGTTTTTCACCGTTTGCTCAGAGCTGCACGTCCAGGCGGCTGAGATAGAGACCATCTTCACAAAGCTGGACGTGGACAGGGACGGGTCCATTAACTTTGAGGAGTTTACTAACGGGTTTCAAGGAGTATCCGACCTCATCTCCCTCCGAGGGATGGAGAGCGAAAACGGGGACTTTCGCCAGGCTTGGGAGCAGTTTCACCACAGACTCGGGGAGCAGGCGAAATTCATCCCAAGagcGGAACAAGTGGCCACCTTGTACCAGAATATCAACCTCACCGAGCCCAGAATGGTGCCTCAGTATGAACGAGTCATAATGAACTTTGTTCGAGAAATCAAGCTTCAGAATTCGGAGATGGAGAACCTAGCGCTGGCTGTGAAAAGAGCTCAGGATAAAGCAGCAATGCAGCTCAGTGAAATGGAGGAAGAGATGGATCAGCGAATACaagcaacagaaaacaacattagACAACAAgaaaacaaaaaagctgaaGCTGCGCTGTATGACCTCAAAAGTCAGTATGAATCCGAGGTCTGTGAATTACAGATGAAAATCCAGAAGATGAAATTGAtagaagaacaatacaaaaatatcaatCTTAAGGATGAGGTTGtgggattaaaaagaaaaataaatgagctgACATTGGAGAATCAGCGACTGAAGAAGGATCTGCTTCAGTCTCAAACTAATATTGCAACCCTCCAAAGTGAACTGGATTCTTTGAAAAGTGTTTTCACAGATCAGAGTATGAACTTTGAAAGGGATGAAGACTTTATCAGAGAATACAGCGATGAAAGGGATAATTTAGCTCGGCAAATCGAGATGCTGCAGTCCGCTAATAGGAAGCTCCATGACAGTAATGATGGGCTAAGAAGTGCACTGGAACAGAGTTTcagcaaatacaataaaagcttACGTTTGCCCAACACGTCCCCATTAAGTACAATTTCAAGATCCAGATCTCCATTTTTTGACAGGTCTTCTCACTCTTCCTACATGGATGAGGACTGTGACTCCCTGGCCATGTGCGACCCCATGCGCAGGGTGAGCTGCGAGGTGGAGAGCCTGGCGGAGAGCTGCTTCGACAGTGGCCTCTCCACCCTCAGAGACTCCAATGACTGCGACTCGGAGGCCGAGACCCGGCTTCAAAAGGCCTTCCAAAGGTCACAGGAGATGGCAGAGAGCCTGGGGGGAGACGCTTCTGACACAGATGTGCCAGAGATCCGAGATGAGGTGGTCTGTGGTTCTGACAGCGGCTCAGTATTAGACTGGAAACCGTCAAATCCGGTCAGCAGGAGCAGTTCAGGAGCCTCAACTCGCAGATGTATTTCTGCAATTTCTCCACAGGTACAGCATCCCATATTAACTTGA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K17199 RASEF, RAB45; Ras and EF-hand domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100289 lncRNA upstream 114170 28261527 ~ 28262672 (+) False AMCG00010407
TU100254 lncRNA upstream 169574 28206321 ~ 28207268 (+) True G80392
TU100212 lncRNA upstream 355158 28021474 ~ 28021684 (+) True G80362
TU100177 lncRNA upstream 439788 27936166 ~ 27937054 (+) True G80331
TU100103 lncRNA upstream 580552 27795510 ~ 27796290 (+) True G80264
TU100364 lncRNA downstream 335838 28725007 ~ 28725281 (+) True G80468
TU100365 lncRNA downstream 382058 28771227 ~ 28775463 (+) True G80469
TU100387 lncRNA downstream 488655 28877824 ~ 28878359 (+) True G80487
TU100390 lncRNA downstream 511000 28900169 ~ 28994462 (+) True G80489
TU100392 lncRNA downstream 567103 28956272 ~ 29023473 (+) True G80491
AMCG00010409 mRNA upstream 5210 28339880 ~ 28371632 (+) True AMCG00010409
AMCG00010408 mRNA upstream 41966 28303292 ~ 28334876 (+) True AMCG00010408
AMCG00010407 mRNA upstream 111399 28242989 ~ 28265443 (+) True AMCG00010407
AMCG00010400 mRNA upstream 134757 28232944 ~ 28242085 (+) True AMCG00010400
AMCG00010403 mRNA upstream 144377 28215856 ~ 28232465 (+) True AMCG00010403
AMCG00010411 mRNA downstream 7498 28396667 ~ 28399391 (+) True AMCG00010411
AMCG00010414 mRNA downstream 171977 28561146 ~ 28582925 (+) True AMCG00010414
AMCG00010424 mRNA downstream 659017 29048186 ~ 29060040 (+) True AMCG00010424
AMCG00010423 mRNA downstream 706168 29095337 ~ 29107346 (+) True AMCG00010423
AMCG00010421 mRNA downstream 834147 29223316 ~ 29228983 (+) True AMCG00010421
TU100171 other upstream 470013 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 501911 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 819835 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 1982320 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 2350539 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 1105448 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 5514646 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 6312269 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 6623146 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 7081166 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile