RNA id: AMCG00010414


Basic Information

Item Value
RNA id AMCG00010414
length 1491
RNA type mRNA
GC content 0.56
exon number 10
gene id AMCG00010414
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28561146 ~ 28582925 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTGTGCATTTCTTGGTTACTGcggaaacagagagagaaccAAGCACAAGTAACTCCTTGCTAGTTTCGGAGAGTCTGCGAAATTCAGACAAACGTCGAAATGGACCCGAATTTTCTAATGatatgaagaaaaggaaagttgATGATAAGGATTCCAGCCATTATGACAGCGATGGAGACAAAAGTGATGACAACTTGGTAGTTGATGTTTCCAATGAGGACCCAGCTTCACCACGAGGCACTCCTGCTCACTCCCCTCGGGAGAACGGTGTGGACAAGACGCGCCTGCTGAAGAAAGACGCCTCCAGCAGCCCGGCCTCCACCGCCTCCTCGGGCAGCTCCTCCTCCCTCAAGTCCAAAGAGATGAGCATGCACGAGAAGGCCAGCACGCCGGTGTTGAAATCCAGTACACCGACTCCTCGTGGAGAAATGCCAATTCCAGGCACCAGTGCCACCCCAGGACTGCGGCCCAGTCTTGCCAAGCCTCCTTCCATGGAACTGGCCAACCAATCTGttgCTGGTCTGAGGACTCCGTTGGCAGTGCCAGGCCCCTATCCTGGCCCATTCGGTATGGTGCCCCATGCTGGGATGAATGGGGAACTGACAAGCCCAGGGGCTGCCTACGCAAGTCTCCACAACATGTCACCCCAGATGAGCGccgctgcagctgctgctgctgttgtagCCTATGGACGCCCTCCCATGGTCGGGTTTGACCCCCATCCTCCCATGCGAGTACCTGGAATGCCTCACAATCTGGCAGGAATCCCTGGAGGAAAACCAGCCTACTCATTTCACGTCACTGCTGATGGCCAGATGCAGCCCGTCCCCTTCCCTCAAGACGCTCTGATTGGCCCAGGAATCCCGCGGCACGCCCGCCAGATCAACACTCTGAGTCACGGAGAGGTGGTGTGCGCTGTTACCATCAGCAACCCCACCAGACACGTGTACACTGGCGGCAAGGGCTGTGTGAAGGTCTGGGACATCAGCCAGCCAGGCAACAAGAGCCCAGTGTCTCAGCTGGACTGTTTGAACAGAGACAACTACATCCGTTCCTGTAAACTGTTGCCGGACGGCTGCACTCTGATTGTCGGTGGGGAGGCCAGCACTTTATCCATCTGGGATCTAGCGGCTCCCACCCCACGCATTAAGGCAGAGCTCACGTCCTCGGCTCCTGCCTGCTACGCTCTGGCCATTAGCCCCGACTCCAAGGTCTGCTTCTCGTGCTGCAGCGATGGGAACATCGCGGTCTGGGACCTGCACAACCAGACTCTGGTCAGgcAATTCCAGGGCCACACGGATGGAGCCAGCTGTATTGATATTTCCAATGACGGCACCAAGCTGTGGACGGGAGGCCTGGACAACACAGTGAGGTCCTGGGACCTGAGAGAAGGCAGGCAGCTCCAGCAGCATGACTTCACTTCACAGGTGAGCTGGCCGACCAAGGCACTTGATCAGtatttaaatgaacatttaaactaCATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100289 lncRNA upstream 298474 28261527 ~ 28262672 (+) False AMCG00010407
TU100254 lncRNA upstream 353878 28206321 ~ 28207268 (+) True G80392
TU100212 lncRNA upstream 539462 28021474 ~ 28021684 (+) True G80362
TU100177 lncRNA upstream 624092 27936166 ~ 27937054 (+) True G80331
TU100103 lncRNA upstream 764856 27795510 ~ 27796290 (+) True G80264
TU100364 lncRNA downstream 142082 28725007 ~ 28725281 (+) True G80468
TU100365 lncRNA downstream 188302 28771227 ~ 28775463 (+) True G80469
TU100387 lncRNA downstream 294899 28877824 ~ 28878359 (+) True G80487
TU100390 lncRNA downstream 317244 28900169 ~ 28994462 (+) True G80489
TU100392 lncRNA downstream 373347 28956272 ~ 29023473 (+) True G80491
AMCG00010411 mRNA upstream 161755 28396667 ~ 28399391 (+) True AMCG00010411
AMCG00010410 mRNA upstream 171977 28376842 ~ 28389169 (+) True AMCG00010410
AMCG00010409 mRNA upstream 189514 28339880 ~ 28371632 (+) True AMCG00010409
AMCG00010408 mRNA upstream 226270 28303292 ~ 28334876 (+) True AMCG00010408
AMCG00010407 mRNA upstream 295703 28242989 ~ 28265443 (+) True AMCG00010407
AMCG00010424 mRNA downstream 465261 29048186 ~ 29060040 (+) True AMCG00010424
AMCG00010423 mRNA downstream 512412 29095337 ~ 29107346 (+) True AMCG00010423
AMCG00010421 mRNA downstream 640391 29223316 ~ 29228983 (+) True AMCG00010421
AMCG00010420 mRNA downstream 666527 29249452 ~ 29251205 (+) True AMCG00010420
AMCG00010422 mRNA downstream 690286 29273211 ~ 29283590 (+) True AMCG00010422
TU100171 other upstream 654317 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 686215 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 1004139 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 2166624 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 2534843 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 911692 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 5320890 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 6118513 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 6429390 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 6887410 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile