RNA id: AMCG00010425


Basic Information

Item Value
RNA id AMCG00010425
length 468
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00010425
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29315300 ~ 29317556 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAGCCTCCCGTATTTCTGCAGAGGAGAGGTGGTCCGTGGATTTGGCCGGGGCAGTAAAGAGCTCGGGATCCCCACAGCTAATTTCCCAGACTCTGTGGTTGACAATTTGCCAGCTGATATCTGTACTGGAATTTATTATGGCTGGGCCTGTGTCGGCACTGGAGACGTACATCGAATGGTGATGAGTATCGGCTGGAACCCTTACTACAAGAATACTAAGAAATCAATGGAAACACACATTATCCACACATACAAAGAAGATTTTTATGGAGAAGTTCTCAGTGTAGTTGTTGTTGGCTACGTCCGTCCCGAGAAGAGCTTTGACTCATTAGATTCCCTCATTGCAGCAATTAACAATGATATTGAAGAGGCAAAAAGGAGGCTAGATTTACCTGAGCACAACAAATTGAGAGAAGACAATTTTTTCAGGACTTCAGCAAACCAAATAATGAATGGGCATTAA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0009231 riboflavin biosynthetic process biological_process
GO:0008531 riboflavin kinase activity molecular_function

KEGG:

id description
K00861 RFK, FMN1; riboflavin kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100492 lncRNA upstream 11750 29298158 ~ 29303550 (+) True G80567
TU100431 lncRNA upstream 197242 29115832 ~ 29118058 (+) True G80521
TU100429 lncRNA upstream 205281 29109197 ~ 29110019 (+) True G80519
TU100391 lncRNA upstream 250927 29061784 ~ 29064373 (+) True G80490
TU100392 lncRNA upstream 291827 28956272 ~ 29023473 (+) True G80491
TU100505 lncRNA downstream 34598 29352154 ~ 29357030 (+) True G80580
TU100527 lncRNA downstream 125554 29443110 ~ 29457978 (+) True G80595
TU100535 lncRNA downstream 165735 29483291 ~ 29484341 (+) True G80599
TU100605 lncRNA downstream 453871 29771427 ~ 29775799 (+) True G80652
TU100619 lncRNA downstream 541217 29858773 ~ 29860382 (+) True G80663
AMCG00010422 mRNA upstream 31710 29273211 ~ 29283590 (+) True AMCG00010422
AMCG00010420 mRNA upstream 64095 29249452 ~ 29251205 (+) True AMCG00010420
AMCG00010421 mRNA upstream 86317 29223316 ~ 29228983 (+) True AMCG00010421
AMCG00010423 mRNA upstream 207954 29095337 ~ 29107346 (+) True AMCG00010423
AMCG00010424 mRNA upstream 255260 29048186 ~ 29060040 (+) True AMCG00010424
AMCG00010431 mRNA downstream 177007 29494563 ~ 29503523 (+) True AMCG00010431
AMCG00010433 mRNA downstream 192086 29509642 ~ 29513418 (+) True AMCG00010433
AMCG00010432 mRNA downstream 198203 29515759 ~ 29524516 (+) True AMCG00010432
AMCG00010434 mRNA downstream 210228 29527784 ~ 29551538 (+) True AMCG00010434
AMCG00010437 mRNA downstream 481684 29799240 ~ 29814090 (+) True AMCG00010437
TU100171 other upstream 1408471 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 1440369 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 1758293 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 2920778 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 3288997 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 177061 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 4586259 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 5383882 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 5694759 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 6152779 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile