RNA id: AMCG00010434


Basic Information

Item Value
RNA id AMCG00010434
length 5821
RNA type mRNA
GC content 0.46
exon number 38
gene id AMCG00010434
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29527784 ~ 29551538 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAATGAACAGGATTTCTGAGCTCCACCATTTCGATGTGAGTTCTCCTGTTTTTCCAGTGCCAAGTCTGTTGCTTGGTTTTTGGCAACTAAGATGtccAGAATATCATGGATTGAAGAAACATTCTGCAAAAGGgaatgtatgaaatatatacCAACATCGAGAGATCCGCACAGATGCAATCCAGGATGCCAGGTGTGCCAAAACTTAATCAGGTGTTGCTGTGGTCGGCTGATCGGAGAGCACTGGGGTTTAGACTTCACCTCCCCAACCCACCTGTCGGTCCCGGCAAGTGAGAATGAGGAATGGTCCATTGAGCGGAACACCCTTGCCAGTCCCACAGATGCCTTTGGCACCATTGACTTTCAAGATGGAGCTCGTTCCTCTCGTGCCAAGtacatCAGAGTTTCATATGATACCAAATTAGACCAGCTGTTACACTTAATGGTGAAGGAATGGCAGATGGATCTGCCAAAACTGGTGATTTCAGTCCATGGTGGCAATCAGAACTTCGAACTGTCTCCGAAGGTTAAACAGATCTTTGGAAAGGGACTGATGACAGCTGCGGAAACAACCGGAGCCTGGATAGTGACTCAAGGCACTAACACAGgaaTATCAAGACATGTTGTCTGTCTCTATCAAACATTGGGCAACCCCCTGAGCAAACTGATGTGCCTTAATAGTATGCACTCTCACTTTATCCTGGTGGATGATGGGACTGTTTATAAATACGGGAATGAGATGAGCCTGAGGAGAAAACTGGAAAAGTACATTGGACTTCAAAAAATTCACTCTAGGTTGGGTCAAGGTGTTCCTGTGGTAGGTGTGGTGGTGGAAGGTGGCCCGAATGTGGTGCAGGTGGTGTGGGAGTATCTGAGGAGAACTCCCCCTGTGCCCGTGGTCGTCTACGAGGGGACCGGCAGGGCTGCAGACCTCCTGGCTTTTGTGCACAAACAGACAGCCGATGACAGgcaTCTCAATCCAGATATCAAAGAAGACATCATTGTTATGATCCAAAACACCTTCAATTTTGGAAAGACACAATCGCATTACCTTTATGAAATTCTAATGGAATGTATGGAGTACCGAGATTCCATAACTATCTTTGATGCTGAATCAGAAGATCAGCAAGATATAGGCACAGCTATACTGGCTGCATTGCTAAAAGGGACCAATGCCTCTGCATCTGATCAGCTGAACATTGCACTGGCATGGGATAGCGTGGATATTGCTAAGAAGCACATTTTAGTGTATGGACAGCACTGGAAGGTGGGGTCCCTGGAGCAGGTCATGCTGGACGCCCTTGTGATGGACAGAGTGAGCTTTGTGAAGCTGCTGATAGAGAACGGCATGTGCATGAACCGCTTCCTCACGGTGTCCCGGCTGGAGGAGCTCTACAACACGCAGCAGGGACCAACAAATAGTGTCCTGTATCATCTTGTGAGAGAAGTGAAGCAGGGCCATCTTCCCCCAGGTTACAAGGTGTCACTGATTGATGTCGGGCTGGTGATTGAGTACTTAATTGGGGGAGCGTATCAGAGCACATATACACGCAAGCATTTCCGAGTTCTTTACAATAGCCTTTACAGGCAAAGAAAGAAAGTTAGTCAAGCCGATTCTGTGAACTTTAACACACAGAGCAAACAATTCAACagcaaaattgaaaatgaagacAGTATTCCACAATCACATTTCTTCAGAATGGCTCAGCCGTACAAATGCAAGGAAAAACATGTGTTTCATCATAAGTCAGAAAAGAAGCAGAAAGACGAATTGTTTTTCCCCCAAGAGAATGAAGCTCCGGTGTTCACGTACAGCTTcaatgatttgtttgtgtgggCAGTGCTAATGAAGAGACAGAAAATGGCTCTTTTCCTGTGGCAGCACGGAGAAGAGGCTATGGCTAGGGCAGTGGTGGCTTGCAAACTGTACCGCTCCATGGCATATGAAGCCAAGCAGAGCAACATGGGAGACAACACTTTTGAAGAGTTAAAGACATATTCACTAGAGTTTGGGGAGCTGGCCGTGGATGTTTTGGACAATGCTTTCAGGCAAAATGAGAGGATGGCCATGAAACTGCTGACCTATGAAATGAAGAACTGGAGCAACTTCACGTGCCTGAAGATGGCAGTGTCGTCTGGGCTGCGGCGCTTTGTGTCTCACACCTGCACGCAGATGCTACTCACAGACCTGTGGATGGGCCGACTGAACATGAGGAAGAACTCCTGGTTTAAGGTGATTTTGAGCATCCTGTTGCCTCCCACCATTTTGATGCTGGAGTTCAAAAGTAAAGCAGAGATGTCCCACATTCCCCAGTCACAGGAGTACCAGTTCAGCTGGGAGAGTGCGAATCATGGGCCTCAAAGCAAAGACCATTCACTAGAGAAGGAGTATGATCCTGAGAAGGGACATAAAAAAGCAGAGTTCACAGACCAACAGAAAGGGATTTTCTGGACAAGGAAGATCTATGAATTCTACAATGCACCTATTGTGAAGTTTTGGTTTCACACGATGGCCTATGTGATCTTCCTGATGCTGTTCACATACACTGTCCTGGTGAAAATGGGGCCTGAACCATCTGTCCAGGAGTGGCTGGtcattttctatattttcacCACAGCAATTGAGAAAGTCAGAGAGGTCCTCTTGTCGGAGCCAGGAAAACTCAGTAAGAAGATAAACGTCTGGTTCAGTGAGTACTGGAACATCACAGACGTCTTAGCCATTGTGCTTTTTGTCATTGGCTTTGCACTGAGATGGAAAGATCAGCCACTGCAGACATTAGGACGAATAATTTACTGCCTGGATATTATTTTCTGGTATGTGCGGCTTCTGGACTTGTTTGCAGTAAACCAACATGCAGGCCCATATCTGACCATGATAGCTAAGATGactaaaaacatgttttacattgtgaTAATGATGGCAATTGTACTGCTTAGCTTTGGGGTGTCCAGAAAGGCTCTTCTTTCACCAGATGAGCCCCCTTCCTGGGTACTGGCTAAAGATGTCGTGTTCCAGCCATACTGGATGATATTTGGTGAAGTGTACGCCGGTGAAATTGATGCTTGTGCAGAAGACCAGCCATGCCCTCCTGGTGCCTTCTTAACGCCATTCCTGCAAGCAGTCTACTTGTTTTTTCAATACATCATAATGGTCAATACCCTAATAGCCTTCTTCAACAATGTGTACTTTGATATGAAATCTATATCCAACAAATTATGGAAGTATAATCGGTACCGATACATCATGACTTATCACGGAAAGCCATGGCTGCCACCCCCTCTCATCCTGTTGAGTCACATGACCCTTTCTGTCTTGCACATCTATCAACACCGATCAAAGGAACTGGCACTAGATGATGGTTTTGGACTGAAGCTTTACTTGAGCAGTGACGATCTGAAGAagcttcatgattttgaagaaaaatgtgttgtgcGATACTTTCATGAGAAGAATGAGAACTTCCACTGCAGTGATACCAATAGAATAAAGTCCACAACCGAAAAGGTTGAGGAGCTTTGTGAGCAGTTAAAAGAGGTTGCAGAGAAAGTTTATTTCATCAAAGACACTCTGCAGTCTCTGGACAGTCACTTGGGTCATCTGCAGGACCTTTCTGCCCTGACAGTGGACACCCTGACTGTCATATCTGCAGCTGATAGCTTGAAAGTAGAGGAAGCCCTGCTGGGCCACGAAAGATACAGCTCCTGTAAAAAGCTCCCACATAGCTGGAGCAACATTGTGCACGTGAGGTCTGTGGAAAATGTTCACGATGACATTCAGAAGCAGTACTACAGCACCCCACCTTCTCTGCTGAGCAGCCTGGTCTATGGGCGGGAGCCACTGGACTGCGGCGATAACAAAGAGGAGGAACAATGGCGTCCTGATAGTCCAGACTTGAATACCCGGAAAGAggagggaagggagagagagccaGTACCCTTCACAGTCTCTGAAGATCATGAGGTCAATTGGAGGTGTGGAGCCCTCATGCCTTCATGTCTGAAGTCCTCAGCCATTACTAGAGATCATAAGAATATCTCCTTcccaaaaatgaaaaccctaTGCCTGTGTCCGACAGATTTCACAAAGAATGAAAGCATCCCCTCTGGCATACCCGTTCCTCTCCCGTGTGTTAAAAGTCTCTGTTCTGTAAAACACCCAGAGGAACATCAAACACAAAGAGTGATTTCTGAAAGTCATCTGCCCTGGAGCCAGAAGGAtgctggcaaaaaaaaagaatcccaCTACATCGAAACCCCCCTCTTTGCAGACTCTCATGGTGAAGAAAGCGCCAGGGGCTTTGTCAATCTGGCCTACAGTGAGGGCAGTGAACCTGGAATATTCCCGATAACCCAGATGAGACAGAGCATGGAGGGCTCATGCAAAAGAGACAAGAACTATGCCAGCTGGGCCCTCAAAATGGGTCAGTTCAGAGATAGTTATTCCTTGTTCAATAGCTCAGACAGTATGGAGTCATTGCCCACAAGGCAGCGAAGTTTTACATTGGTGTGTGACTCCCCTCTGGAAAGGGACAGCTGGTTGGTCGGGAGAAGCAACAGCCTGAGAGCCCAGGGAGCCAACAATCTGCAGAGCCCCAGCAAACACAAAgAAATGTCTAAATCTTCAGAAATATACCAAGTTCAGAAGCCACGAAAAAAAGTTCTTAAGAGAAAGGCTGTAAAAATACAAGAGAAAACTGCTGATTCTTCAGAGCCAGTGATATCAGGTGATAGATATTCACATGGTCCTCCCATGAATCTGGAAGCTGcaccaaagaaaacacaaaatctcAGGAGCAAAGGAAATATAAACATCTGGTCAAAACTACCCAGCTTCAGCCAACTAAATGTTGAACAGATTAACTTTATGGGAAAGAGGCTTCGTCATcatgaaagcaatgcaaactTGTTGCAGTCAAGTGAAATTTTCGGGTTTCCTGGTCAGGAGCAGGCCAGTGCCTCAGTGTGGAACAGTAGGACAAAAACGCTGAGCCGCAAATCTTCGGAGCAGAGTTTCATAGGAATCGATGcaAAGGGCTCTACATTTAAATCCACCGAAGACCTCGACCATcattattcagCTGGTGAGCAAGTGACCTTATACAGTCTGGAAGAGAGCTCACCAGCCACACTGGACAGGAGCATCTCCTCCTGGTCTCAGAGAGGTTTGGTTGCTCTGGTTCAGCCCTTGGCTCAGGAGGAGATGGACGGCGGGCTGCGGAGGGCCGTGACCGTGGTCTGCACCTGGTCGGAGGGCGATGTGTTGAAGCCAGGAGGTGTTTACATTGTGAAATCCTTCCGTCCTGAGGTGGTCAGGACATGGGAGAagatatttgaagaaaaaactatCCTTCATCTGTGTCTCAGGGAAATCCAGCAGCAAAGGGCTGCTCAAAAACTCATCCACATATTCAATCAAGTGAAACCCCATGCCATCCCCTATTCTCCAAGGTTCTTGGATGTCTCTTTGCTCTATTCCCACTCTGCTGATGAGTGGCTGACCatagagaagaaaataaatggagacTTCAAAAAGTACAACAATAACAACGGAGAAGAGATCACTCCAATGAATGTTCTGGATGAAACAGTGCTGGCTTTCTCTCATTGGACTTATGAGTATTCTAGGGGAGAACTCTTAGTCCTCGATCTACAAGGAGTCGGTGAAAACCTGACAGATCCTTCAGTCATCAAAGCAGAAGACAAACATGTCCAAGAAATGGTGTTTGGACCTGCCAATATTGGAGATGATGCTATCAAGAACTTCATCCAAAAACATCAGTGTAACACCTGCTGCAAAAAACTCAAACTTCCAGGGTAA

Function

GO: NA

KEGG:

id description
K04981 TRPM6, CHAK2; transient receptor potential cation channel subfamily M member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100535 lncRNA upstream 43443 29483291 ~ 29484341 (+) True G80599
TU100527 lncRNA upstream 69806 29443110 ~ 29457978 (+) True G80595
TU100505 lncRNA upstream 170754 29352154 ~ 29357030 (+) True G80580
TU100492 lncRNA upstream 224234 29298158 ~ 29303550 (+) True G80567
TU100431 lncRNA upstream 409726 29115832 ~ 29118058 (+) True G80521
TU100605 lncRNA downstream 219889 29771427 ~ 29775799 (+) True G80652
TU100619 lncRNA downstream 307235 29858773 ~ 29860382 (+) True G80663
TU100718 lncRNA downstream 754947 30306485 ~ 30307387 (+) True G80746
TU100830 lncRNA downstream 965735 30517273 ~ 30519628 (+) True G80830
TU100916 lncRNA downstream 1214799 30766337 ~ 30814741 (+) False AMCG00010467
AMCG00010432 mRNA upstream 3268 29515759 ~ 29524516 (+) True AMCG00010432
AMCG00010433 mRNA upstream 14366 29509642 ~ 29513418 (+) True AMCG00010433
AMCG00010431 mRNA upstream 24261 29494563 ~ 29503523 (+) True AMCG00010431
AMCG00010425 mRNA upstream 210228 29315300 ~ 29317556 (+) True AMCG00010425
AMCG00010422 mRNA upstream 244194 29273211 ~ 29283590 (+) True AMCG00010422
AMCG00010437 mRNA downstream 247702 29799240 ~ 29814090 (+) True AMCG00010437
AMCG00010441 mRNA downstream 297857 29849395 ~ 29864398 (+) True AMCG00010441
AMCG00010440 mRNA downstream 363055 29914593 ~ 29926083 (+) True AMCG00010440
AMCG00010448 mRNA downstream 430652 29982190 ~ 29983125 (+) True AMCG00010448
AMCG00010447 mRNA downstream 440394 29991932 ~ 30021803 (+) True AMCG00010447
TU100533 other upstream 24333 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 1620955 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 1652853 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 1970777 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 3133262 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 4352277 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 5149900 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 5460777 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 5918797 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 6525575 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile