RNA id: AMCG00010437


Basic Information

Item Value
RNA id AMCG00010437
length 1782
RNA type mRNA
GC content 0.43
exon number 12
gene id AMCG00010437
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29799240 ~ 29814090 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gAACAAACAGTACAAATTATAAGGAGTCactaccaaaataaaatgaatgttatGAAGAGAATACTAGACATGTATCAAGAAAAAGTAGAACGCCAAAACACATGTTGGGGAGAGACAATTAAGGAACTTCAAATTGCTAGACTTGAACTAGGAAAAGTTCAGGAGATGTTAAAGCCCCCTGATATGAAAGGGAGGGAAATCAATGCTTCAGGGATTCTCACTGTGACTGATAACCCTGGCATGGAGACACAGCAGCAAAACCCAAATGTGGAAGACGGGAACAATCAgCTGGTGGAGTCTGCGCTTGAGGCTCAGAGCTCCAATACCAATGACAGTCAGCTAGAGGGGGCCCAAGCCCGTCTGGAGGTCCTGAAAGAGAGTCTGTACAAGAGGGAGCGAGAGATCACCGAGCTGCTGCAGAGTGAGAAGGAGACGGAGGCAGAGAAGAAGGGAGGAGCCCATAGTACCTATTGCGAAGTTCCTGAAGCAAAGAATTTCATTGACAGTAAGGCGGAGGAGAACACCTTGGCTCTGTCCAGTGCCAAGGAAAGTCTGAATCGAGCACAAAGCAGTGTGGTCAATTGCGAAAATGAAAAGGGAACCATCACAGATCCAAAGAGAACAAAAAGCACTGGCCAGAAACTTTTGTTGCTACAGACTGAGTTAAAACAGCttaaggaggaaaataaaaaaataacagaaaattacAACTCTGAACGAATACTGAGGAAGAAATACTACAATATAGTGGAGGATATGAAAGGAAAAATCAGGGTCTTCTGTCGTATAAGACCCTTGAGTAAATCTGAAATAGCCAATGGAAGCAGTTTTGTTGTGGACTGTCCAGATGAATATTCTATAGCTGTGCACAGCTCTCGTGGCTTAAAAGAGTTCCAGTTTGACAAGGTTTTCAACAGCACAAGTTCACAGGAGGACATTTTTGAGGACACAAGCAGgCTAATTCAGTCAGCAGTAGACGGCtacaatgtttgtattttttcttatggACAAACGGGCTCAGGGAAGACATTCACGATGGTAGGTGACAAAGAGTTGAAAACCCCAGGTGTCATGCCAAGAGCTTTCAGCAGAATCTTTAACATCATCGAGGAGAATAGAACAAAGTTTGATTTCAAGGTCTCGGCCTACATGCTGGAGCTGTATAATGAACGCCTACTTGATCTCTTTGTAAATCCAAATGAGGCTCTCAACAAAAAGATTGAAATTAAGAAGGACAAAAAGGGACTTGTGTTTGTCCAGGGGGCAGAGACAAAACAAGCAGCTAGTGCTGAAGAGCTTTTTGCACTCTTTGAACAGGGCTGCACAAACCGACATATTGCAGACACAAAAATGAATTCTGAAAGTTCACGATCTCACCTGATGATTGGAGTGATCATTGAAAGCACAAATGTTACTAATGGGAGTGTCACTTATGGAAAACTCAGCCTGGTTGACTTGGCAGGAAGCGAAAGGGCTGCAAAGACTGGAGCCAAAGATGAGCAGCTCAAGGAGGCCAATTCCATCAATAAGTCTTTGAGTGCCCTAAGTGATGTTATATTCGCCCTGTCAACTGAGCAAACCTACATCCCATACCGCAATAACAAGCTGACTCAGCTCATGCAAGATTCTCTGGGAGGCAATGCCAAAACACTTATGTTTGTGAATATCTCTCCCTCTGACTACAATGTTGAAGAAACCCTAATCTATGCCATGCGAGTGAAAGCAATTACGAATAATGCACAGAAAAATGTAGAATGCAAAGAGATTGCTCATCTTAAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100605 lncRNA upstream 23441 29771427 ~ 29775799 (+) True G80652
TU100535 lncRNA upstream 314899 29483291 ~ 29484341 (+) True G80599
TU100527 lncRNA upstream 341262 29443110 ~ 29457978 (+) True G80595
TU100505 lncRNA upstream 442210 29352154 ~ 29357030 (+) True G80580
TU100492 lncRNA upstream 495690 29298158 ~ 29303550 (+) True G80567
TU100619 lncRNA downstream 44683 29858773 ~ 29860382 (+) True G80663
TU100718 lncRNA downstream 492395 30306485 ~ 30307387 (+) True G80746
TU100830 lncRNA downstream 703183 30517273 ~ 30519628 (+) True G80830
TU100916 lncRNA downstream 952247 30766337 ~ 30814741 (+) False AMCG00010467
TU100917 lncRNA downstream 952247 30766337 ~ 30814741 (+) False AMCG00010467
AMCG00010434 mRNA upstream 247702 29527784 ~ 29551538 (+) True AMCG00010434
AMCG00010432 mRNA upstream 274724 29515759 ~ 29524516 (+) True AMCG00010432
AMCG00010433 mRNA upstream 285822 29509642 ~ 29513418 (+) True AMCG00010433
AMCG00010431 mRNA upstream 295717 29494563 ~ 29503523 (+) True AMCG00010431
AMCG00010425 mRNA upstream 481684 29315300 ~ 29317556 (+) True AMCG00010425
AMCG00010441 mRNA downstream 35305 29849395 ~ 29864398 (+) True AMCG00010441
AMCG00010440 mRNA downstream 100503 29914593 ~ 29926083 (+) True AMCG00010440
AMCG00010448 mRNA downstream 168100 29982190 ~ 29983125 (+) True AMCG00010448
AMCG00010447 mRNA downstream 177842 29991932 ~ 30021803 (+) True AMCG00010447
AMCG00010449 mRNA downstream 372846 30186936 ~ 30208135 (+) True AMCG00010449
TU100533 other upstream 295789 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 1892411 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 1924309 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 2242233 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 3404718 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 4089725 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 4887348 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 5198225 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 5656245 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 6263023 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile