RNA id: AMCG00010445


Basic Information

Item Value
RNA id AMCG00010445
length 5170
RNA type mRNA
GC content 0.38
exon number 2
gene id AMCG00010445
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 30264723 ~ 30271663 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taattactgaacTTTATAGAGTTGACTTTCTTTATttagttaatacatttaaataaataaaacaaaacaaacagttctAGGTTTTCAGAGAAAAACGTTTGTCCTAAAGTGAACGGCTATGTACCGGGATTATTCGTTATAAATAGGCATGTTACTTTTGCTCTGCTTGGCACACTTAGCCATGTCTAACATGCCATATATGTTATTTCAGATACTCAAGTtgtaatgaacaaaaaaaagtgtgttttaacatacatatatatacatttcagtagTTAGATTGACACAACTATCAAAATAAAGAAGGGACTTTATTGAGCATCTTGatgaatacaaacaaaccacaagTGCAAATCAGAAAAGACCTGCTGCTTTTCTTCAGTTACAGGAGTAGGTGGTAGACTTGTTTAATTTGCTATGGGTACTAAAGTAGGTGGGATTGATAAAGTAGctataaaaaaactataaatatgaCTTTGACCAAATTCAGGATCCAGGCAGCTGGCAAATGATATTAACATgttgaaattaatgaaatattagATACAGAAAGCAGTAAGGTAGTCTAGAGATATAAGTGACAAAttgaagaaaaactattttgagGATTTTGAttgatatgttaaaaataactgtCCTGAAGAGAGTTCACGGACGAGTGACTTGAGAAATCTCCAGTCTCAAAGCAATCACACATGGACACATGGACAGGTCTTGGTCCTCAACAAATGAAATGGGGAATTGTACTCTGAAGGCGATGGACAAAGTCAGCTGCTAAGGGCTTAAATTGTACAATGAAATAATGATCAGAGGTCATGAGTCAAAGTCAGGATTAGGTATGTTtatgatcaaataaaaatggaggCCCTTTTACACAAAGAACTGAGGGGTCTGGAACAACTACAGAAGCACACAAATGAATCTCGGAATTACTCCAAGAACCTGAATTCCACTAGGAATttacaacaaaatgaaatacaataccATTGTTtctgattataaaataaatatttgagagTAATTTGGCCAATTTACAATGTATCCTAATGGATGCTTATCGGTTTTTGGTATGCTGTCCCtccaaagtaaataaaagaatCCAAACAACTGCTCTCTGCTATACTCCCACATGGCATTTTTAACGAGTTCAATTACCCCATACTTAAGATACCACAGGAAAGTAAAACGTATTATAAATTCAGAAACAATTCAAAGTAATTGGAATTAGAATCCGAGTAATAGAAATTAGAACAAAATACcaattacagaatacaaaaaatgcTTTCTAGGAAACCAACTTGAGCTCATTTTCCTCACACTAGTTCCGGGTTTTCATTTAGAAAACACCCCGAAAGCCCGATTGGTTCTCATGGCGTGTCAATCAACCCGGTATCAAAGTACACAATAAAACGTCACTGTCCCCTTGAGCCAATCAGAGCCTGACTTTATTATGACACCCAGGGATTCCGCGAAATTGTTCCTCTGAGAAGAGAACGCCGAATTATTCCGAGCGAGTAGAAGCGTGAGAGACCGGCAACCCGCGCCACCGTCCTGTTTTTCTCATCTGCGGGTTACTTTTATACTTTATCCACTGTTTCCTGTAACTGGAAACAAAGAATAGGCACTTTATACATGTATACCTGTTCTTAATTGTATACAGAAACCTTGAATTTCTGTATACAATCCTGTAACCTACTTCTTTAAAAGAGTCACATACGCAGACACGTGTGGAGTCAGCAGATGGGGGCATGCACATGTCTGCAGACCAGGAGAGCTAGCTAGTGCCGCCTGGCCAGCCTACACGTGGTGTCCGGTACAGTCATTGTTATGCATCTCGCCTTTTTCggatcattttaaaatccacagCAACGTCGCCGGGATCACTACGGTTTTGGGGGATACAATATtatccacaaaataaaaaccagtAACATCATGTCTGACGTTGATTTTGCGGCGGAGTGCTTGGTTTCCATATCTAACCGGGCAGCTGTACACCGCTGTCCTGAATTCCTGATGCCCGAAGAGGTGACGAGGGAGACCCAGGAGAAGGGGACTCTACTGATGGTGGCGAGCATTTTGCTGGACTTGAATAAATGCAACCCCCTTCCGAGCAAGCGCCTGAGTGAAAGCGACCCGGCCGAGGTCCTGGTCAGCCGGGTCGGCGGAGACGCGTACGATTTCGGACGGACGAAGCAGAAGTCGCGGGTCTTAAGACCGACGTCCGACAGAAAAGGTGGGAAGCTGCGTCTGGCGGCCGAGAAGAGACACAGCTGCCCCCACACCGGCTGCGGGAAGGTGTACGGGAAATCGTCGCACTTGAAAGCGCACTTCAGGGTACACACCGGTGAAAGGCCCTTCAAATGCACTTGGCCCGATTGTTTGAAGAAGTTCTCTCGCTCGGACGAGCTGACGCGCCACTATCGCACACATACCGGTGAGAAGAGGTTCAGCTGCCCACTGTGTGACAAGTGCTTCATGAGGAGTGACCACCTGACCAAGCATGCCCGACGCCATGCCGACTTCCATCCCAGCATGATCAAGAAGGCCAGCTGGAGGACGCGCTCTTCAGCCTCTTGCTCCTCCTCGGAGTCGGGGGACCTGATGTCTGCGAGTAACTGAGTCCTGCCTGGAGCAAACTGGTCACCTGGAAAACCCACCAGCACAGATGGACCAACACTGAGGAGTTAGAAGGCCTCTGTGAAAATAAGACTGTCTGGTTAGGAGCTGCCCacctgtttttaaagaaaatctgtaatattgtatattctCTTGCCCAGGATGAAAGGGATGCTTTTGCAAAAGAAACTCTAGTGCAGAGACTGGAACATCAGACATGGCCGATCTGTGCAACAGATATACATGTTTGAGACATTTGAAAGCAAGGGTAGTTAAGGCCTGGCTTAAAGACTACATATAGGAAAGTGTGTTTCCTATTCAAGCCATAGTATTGACAAGATTGTATGAATTATCCAGCAAtactgtttttcttaaaaaaacaaacaaaaaaaaaaaccttaatatTATTTCTCAGATATTTGTAACCTCTTATTTGCTGATAAGTTTAAGAACAGGgtaagaaattaattttaatacaaatatatttttggtatgtagttttttttgtggtggaaaTTCAAAGACCTATTGGTAACTTGCACTTTATTCCAAATGTTTATATGCAGACATTACAGATGCAATCATTTAAGTATTTCATGCTTAGTGTGcaagttcttaaaaaaaaaaaaaaaaaaaaacagtcctaTATTGCACAGCTGAGCTGAGAAAGATCTGGTGTCATTAAAAGTCTTACAACAATATGCTGAATAGAGCAGGCatccattattttataaataaacgtTTTCTAGAAAATGTGATGAAACCATGAAACAATTCAGATAAATGTTTTCTTACTTTCTATAGTTAAACACAGTGACgacttttcataatttaatagaGTCCGAATACTTGTCACAGATGTCACTTTAACTCTGGTTAGGGGATTGTTTTTTCTGATTTGGGTGACCAGTCCTATGATGctgctttaatatttgttttatccaaCTTCACAGAAGAGGCATATGCAACATGTTCCTGTAGTGATGGTTCAGTAGCTATAGGTAACACTTTTTCATCACAGATTAAGTTGcatatgggggggggggcgtacATTTGTTTGAACAAAATAGAAGGCCAAAAGGATGAGTAAtagatttaatgtatttttcttttacaaatttaaagaaatgcaGTGCATACATATTCATACTaactttaacattaacatatgttgttttgttgcaaTATTAACTGAAtgcaatataaattaattctaAGAATAAAGTATCCTATAATGTAGCTTCTAATTTTCAATGGCACGATTATTATAGCTTTTGTAGTTTTGATACAGTACACACCACTTTAGCCTTCAGCCTGCCTTGAAGTgatgaatgtaatatttttatatattactgtatttttgtacattgGTTAATTTTAAGGATATTAACATGCCTTCCTGTAAAATGTCCCCTGGCTGTTAACAATGATAAACATTCACTTCTGATCTCACTGTATGCATGATCAATATAGGACATACCATTCTTAACAGTTCTGCCTTTTGGAtcttgatttttctttctcacaCAGATACTAAACTATGGGATGTGATGCACAATCTACCTCTGCTTGTACTGGTCTTACACAAAGACAAACCTACAATTCATGTTTTAACTTCAATGCTATGTGAGAGTAATTATATTTGGTATTTAAGACAATAAGGTGAATGTAACTTAAATTTTAAGAGTCAACCTTTAGTATGCATGGATTTtaagttgtattttaaatattttattacagttgatcaaaaatgtatttaaatgttcttttgcAGACTTATGTAGCAATGTAGTGGTTTTCCTGTGATGAAAGTGTGTACGGGCAATGTTGCCAAACCctgcaggatttattttgcatttaaataactcTCCTAGAAACTGACCAGTCATACCCGTTTGCAAATTTACATTGTCTTATTAACGTAATCTGGGAAGTGGCTACTTAGGAACCATTAAGACCATTAATAAACAACTATTGAGTGGCATTCACTAAGAATGAAAATAAGATGGTCAACATATTagcatttaatatatacagtaaaacaaaaacatacatttgttttagtgcCTCAAGGAATGGTGAGCATTAGTTCTTTAGGAGCAGAATTGTATTGGATCTTTACTCATCACAAATGTCATGCATTAGGGGTGCTTTGGAGTGAACAACTTACTGTTTTAACAAGTTGAACACAATTCAGTACACAATTGTGGGGGGGCGGTAAAAAGGACTCTTCAAAAGGTTAAATCCTATATCAGGCAATGTTTTGCTTTCTATAGCTCCATTCATCCTTTTAGTTGCCTTCAGTATTTTCTGCTTGTAACCTCTTTGTACCCCTGTAACcaaataatgacatttcaaCCATACTTACTCTGCAAATATTCTGCTTTCTTGATTATCTGATGTTGGTTTTTGTAACGTTTTGGTTTGACCTAGATATGTACAGTGAATACAATTACCTTTTTTGAATGTTATTTCATGAACCTGTCTGATGCTTCAGAAACAATAAAGGTATAACTGTCTTACTTCAGTATTAtaggttctgttttttttt

Function

GO: NA

KEGG:

id description
K09208 KLF9S, BTEB; krueppel-like factor 9/13/14/16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100619 lncRNA upstream 404341 29858773 ~ 29860382 (+) True G80663
TU100605 lncRNA upstream 488924 29771427 ~ 29775799 (+) True G80652
TU100535 lncRNA upstream 780382 29483291 ~ 29484341 (+) True G80599
TU100527 lncRNA upstream 806745 29443110 ~ 29457978 (+) True G80595
TU100505 lncRNA upstream 907693 29352154 ~ 29357030 (+) True G80580
TU100718 lncRNA downstream 34822 30306485 ~ 30307387 (+) True G80746
TU100830 lncRNA downstream 245610 30517273 ~ 30519628 (+) True G80830
TU100916 lncRNA downstream 494674 30766337 ~ 30814741 (+) False AMCG00010467
TU100917 lncRNA downstream 494674 30766337 ~ 30814741 (+) False AMCG00010467
TU100911 lncRNA downstream 521300 30792963 ~ 30814741 (+) False AMCG00010467
AMCG00010446 mRNA upstream 11584 30225691 ~ 30253139 (+) True AMCG00010446
AMCG00010449 mRNA upstream 56588 30186936 ~ 30208135 (+) True AMCG00010449
AMCG00010447 mRNA upstream 242920 29991932 ~ 30021803 (+) True AMCG00010447
AMCG00010448 mRNA upstream 281598 29982190 ~ 29983125 (+) True AMCG00010448
AMCG00010440 mRNA upstream 338640 29914593 ~ 29926083 (+) True AMCG00010440
AMCG00010450 mRNA downstream 60330 30331993 ~ 30344815 (+) True AMCG00010450
AMCG00010455 mRNA downstream 131841 30403504 ~ 30429312 (+) True AMCG00010455
AMCG00010457 mRNA downstream 314278 30585941 ~ 30602893 (+) True AMCG00010457
AMCG00010456 mRNA downstream 335666 30607329 ~ 30611581 (+) True AMCG00010456
AMCG00010468 mRNA downstream 415304 30686967 ~ 30697621 (+) True AMCG00010468
TU100533 other upstream 761272 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 2357894 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 2389792 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 2707716 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 3870201 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 3632152 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 4429775 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 4740652 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 5198672 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 5805450 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile