RNA id: AMCG00010449



Basic Information


Item Value
RNA id AMCG00010449
length 1092
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00010449
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 30186936 ~ 30208135 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCACAGAAATCATGGATAGAGAGAGCATTCAGCAAGAGAGAATGTGTGCATATCATAGTGAGCGCAAAAGACCACCATAgGTGCTGCTGTGGACGACTGATAGGTCAACATGTTGGACTGCCTCCAAGCATCTCGTCCAGTCAGAACGACAAAAATGAAAGACTCACCAAAAATGACAGTCTCCCAGAGAAGTGGTCCATTAGCAAACACACGCAGCTCAGTCCCACCGATGCGTTTGGAACCATCGAATTCCAAGGAGGGGGACATTCAAATAAAGCAAtgTATGTCCGTGTTTCATATGACACAAAGCCTGATCTCCTCTTACACCTGATGACTAAAGAGTGGCAGCTTGATCTCCCCAAACTACTGATCTCGGTGCATGGCGGTCTGCAGAATTTTGAACTGCAACCAAAACTCAAGCAGGTCTTTGGGAAAGGTCTGATCAAGGCTGCTATGACAACTGGGGCTTGGATCTTCACTGGGGGTGTTAATACAGGAGTCATCCGTCACGTTGGGGATGCATTAAAAGACCATGCTTCTAAATCAAGAGGGAAAATCTGCACAATTGGCATTGCTCCCTGGGGAATAGTGGAAAACCAGGAGGACCTCATTGGGAAAGACGTGGTCAGACCCTACCAGACGATGTCAAACCCTCTAAGCAAGCTTACAGTCTTGAACAGCCTGCATTCTCACTTTATACTGGCTGACAATGGCACAACAGGGAAGTATGGGGCTGAAGTGAAGCTACGCAGACAACTAGAAAAGCACATCTCACTGCAGAAAATTAACACCAGGATCGGACAAGGGGTTCCTGTGGTGGCTCTCATTGTGGAAGGAGGACCTAACGTCATCTCCATTGTGCTGGAGTACCTGAGAGACACTCCGCCTGTGCCAGTCGTTGTCTGTGATGGCAGTGGACGGGCATCTGACATCTTGGCTTTTGGGCACAAATATTCTGAGGAAGGAGGGGTCATCAATGAGTCTTTGAGGGACCAGCTTCTTGTGACCATCCAAAAAACCTTCAACTACAGCCGAACCCAGGCTCAGCACCTCTTCATCATATTAATGGAATGCATGAAGAAGAAGGAGCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU100619 lncRNA upstream 326554 29858773 ~ 29860382 (+) True G80663
TU100605 lncRNA upstream 411137 29771427 ~ 29775799 (+) True G80652
TU100535 lncRNA upstream 702595 29483291 ~ 29484341 (+) True G80599
TU100527 lncRNA upstream 728958 29443110 ~ 29457978 (+) True G80595
TU100505 lncRNA upstream 829906 29352154 ~ 29357030 (+) True G80580
TU100718 lncRNA downstream 98350 30306485 ~ 30307387 (+) True G80746
TU100830 lncRNA downstream 309138 30517273 ~ 30519628 (+) True G80830
TU100916 lncRNA downstream 558202 30766337 ~ 30814741 (+) False AMCG00010467
TU100917 lncRNA downstream 558202 30766337 ~ 30814741 (+) False AMCG00010467
TU100911 lncRNA downstream 584828 30792963 ~ 30814741 (+) False AMCG00010467
AMCG00010447 mRNA upstream 165133 29991932 ~ 30021803 (+) True AMCG00010447
AMCG00010448 mRNA upstream 203811 29982190 ~ 29983125 (+) True AMCG00010448
AMCG00010440 mRNA upstream 260853 29914593 ~ 29926083 (+) True AMCG00010440
AMCG00010441 mRNA upstream 322538 29849395 ~ 29864398 (+) True AMCG00010441
AMCG00010437 mRNA upstream 372846 29799240 ~ 29814090 (+) True AMCG00010437
AMCG00010446 mRNA downstream 17556 30225691 ~ 30253139 (+) True AMCG00010446
AMCG00010445 mRNA downstream 56588 30264723 ~ 30271663 (+) True AMCG00010445
AMCG00010450 mRNA downstream 123858 30331993 ~ 30344815 (+) True AMCG00010450
AMCG00010455 mRNA downstream 195369 30403504 ~ 30429312 (+) True AMCG00010455
AMCG00010457 mRNA downstream 377806 30585941 ~ 30602893 (+) True AMCG00010457
TU100533 other upstream 683485 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 2280107 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 2312005 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 2629929 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 3792414 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 3695680 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 4493303 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 4804180 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 5262200 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 5868978 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile