RNA id: TU100917


Basic Information

Item Value
RNA id TU100917
length 1786
lncRNA type sense_over
GC content 0.42
exon number 7
gene id AMCG00010467
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 30766337 ~ 30817603 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACACTGGCTTCTGGAGGTCTGAGTCACTCAAAGGATTCAACAACTGGTGGTAGCAGGGTTTGGACAGAGccaTTGTTTGAAGGGAGTAATGCTTGGCTTCACAATAATCTGGTTCAGGCAGTCAAGGAGGAGGTTGCAAAATGGACTCGCTTCAGTCAGAGCCACAGAAAGGGCAGCAAACGGAAAAGGGGAGAAGGGAAGGTGATCTTCAAAGAGATAGCCCCTGAGCAGTTGGTGCTGCTACTGGAGCTGCTATTGGAGGAGCCCGATCTGAGCGTGGGGACACTGCGCAGTCTGGTCCAGAGCTACGGTCTGCAGACGCAGGATGCTGAGgtGAGACATCGCTGGTGTGAGCTtgttattaaacacaaacacactgaagcATATGGACATGTGGGACATTTTCTAAAGCAGGATCAGGCTATGGGGGTCTATCTGTATGGGGAACTGATGGTCAATGAGGATGGCAAGCAGCAGGACTTGGCCAGACGGTGCTTCTCAGCAGTGCAGGAGGAAATGGACCCGACTTCCAAGCAAGTTGTGGAGGAGATGATTTTCTGAACAGAGtgGTGTGTTAAAATGCCTGCAATGGGTCGGCACGGTCACTCCGTGCCCTGGGGTGGCAGTGAGATTGGACCTGGCCTCCTGTGCCTACTGAGCTGATAACAGTTCTAATTGTACATACTGGCTCAGTTCAGCAGGAACAGGAGTCTGGCCCCATAGTCAAGTCAAGGATACAAAGGTATTGTTCCGTTGGccttgttgtatttttttcagtctctGAATGACctttattcatttgaaatatactAGACAATAGAGCATTATTCTCCAGCTTTTCGGTCTCTGTAGCGGCCaatttttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatgtatatCATAGCATGTATCAGCATGAATGCTGTAGGGACCTACATGTTCAGCAACGCAGCATTGATTTGAAAGATAAATGtagatttaattgaattataaaaaaaaaacttaataatGTCATGTGAAACTTGGACCTACTTTGGGTATTTCTTTGTCCTGTACCTAACATACTTGGCGGTAGAGCTGCTAAAACAATCAACTGATATGTTGCTCATTCTTATCTGCTCATCTTTTCCAGGGCCGGTGTGAAGCTGCGAGTCAAGGAGAGCCCCAAAGAGCTGCTCACTGGATCTCACTACAAAGCTTCACAGGAGCTCATACTAGCAGGGCAGAACTATTATAGatatataagagcaatacatcACTGGAATGGAACTTATTGGGTCATGGGAAATTGTGTGGATCTGAATAATTGAGTAGCGTGTGAACAAATATAAACCAGTTTATCTCCGAAATGATGTTTCAATAGgattctttttatatttttgtaataaaactgaATAGCGGGCCTGATTCGGTTTTGTATGCTATATTAAATTTAACAGTGTTTGGCTTCTCAGATAAGAACTGTTGTTATCAGGAGAGCAATACCACCCTTTTGTGTCAAGTATACAGCGTTCATTAAAGACCCCATTAAAGCTAAAGGCtaaaatatgcagttttatatttaattgcacagtAATTCTTGAAATGTTGAGTAAAGAGTTCACGGtgggtataaaaatatattttaggggttcaggcaaaaataaatattcagaataCATAACTGCATTCAACTTTCCATGGAACAAGAcgaacaataatgttttttcaatCAGTATGCTTTGACAATACACAAACTCTCaccaaacatttgcatttaaaagaacGTAAGTGTGTACATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100830 lncRNA upstream 246709 30517273 ~ 30519628 (+) True G80830
TU100718 lncRNA upstream 458950 30306485 ~ 30307387 (+) True G80746
TU100619 lncRNA upstream 905955 29858773 ~ 29860382 (+) True G80663
TU100605 lncRNA upstream 990538 29771427 ~ 29775799 (+) True G80652
TU100535 lncRNA upstream 1281996 29483291 ~ 29484341 (+) True G80599
TU100997 lncRNA downstream 231985 31046726 ~ 31070527 (+) True G80969
TU101022 lncRNA downstream 292319 31107060 ~ 31107603 (+) True G80988
TU101023 lncRNA downstream 295027 31109768 ~ 31110142 (+) True G80989
TU101064 lncRNA downstream 743975 31558716 ~ 31627547 (+) True G81020
TU101072 lncRNA downstream 957413 31772154 ~ 31772357 (+) True G81026
AMCG00010470 mRNA upstream 7537 30739193 ~ 30758800 (+) True AMCG00010470
AMCG00010469 mRNA upstream 31264 30708690 ~ 30735073 (+) True AMCG00010469
AMCG00010468 mRNA upstream 68716 30686967 ~ 30697621 (+) True AMCG00010468
AMCG00010456 mRNA upstream 154756 30607329 ~ 30611581 (+) True AMCG00010456
AMCG00010457 mRNA upstream 163444 30585941 ~ 30602893 (+) True AMCG00010457
AMCG00010474 mRNA downstream 77644 30892385 ~ 30927540 (+) True AMCG00010474
AMCG00010475 mRNA downstream 178862 30993603 ~ 31012828 (+) True AMCG00010475
AMCG00010476 mRNA downstream 222899 31037640 ~ 31040193 (+) True AMCG00010476
AMCG00010477 mRNA downstream 249896 31064637 ~ 31071620 (+) True AMCG00010477
AMCG00010480 mRNA downstream 268142 31082883 ~ 31087934 (+) True AMCG00010480
TU100533 other upstream 1262886 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 2859508 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 2891406 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 3209330 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 4371815 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 3089074 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 3886697 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 4197574 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 4655594 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 5262372 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071360 True 142 miRNA 0.53 1 NC_007119.7 30162492 ~ 30162633 (-)
grasscarp (Ctenopharyngodon idella) TU578944 True 929 lncRNA 0.40 1 CI01000347 1598629 ~ 1599557 (-)
tiger barb (Puntius tetrazona) TU109722 True 766 lncRNA 0.38 1 NC_056708.1 1866988 ~ 1867753 (+)