RNA id: AMCG00010477



Basic Information


Item Value
RNA id AMCG00010477
length 1162
RNA type mRNA
GC content 0.41
exon number 11
gene id AMCG00010477
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 31064637 ~ 31071620 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCAGGTTTCCACGTCAGTTTCGTTACCTGATTCAGAACAAGTGCATTCTAGATTAGTTAAAGTTCTCTCAGCGATGTTTTATGCCGCCAGCTCTTTTCTCATTATTCTAGTGAACAAAAACATCCTTACAAACTACAGGTTCCCTTCTTATCTCTTCCTAGGGATTTGTCAGATGGCGACAACAATACTTGTACTCTACACTGCAAAACTGACTCAAACTATTAGTTTTCCAGATTTTGACAGAAATATACCTTATAAGATTTTTCCACTACCACTTCTTTATGTTGGGAATCATGTGACAGGACTGGCAAGCACAAAGAAATTAAGTTTACCAATGTTCACTGTTCTGAGGAAATTTACAATTCTAATGACAATGATCCTTGAATCAAGACTGTTAAGCTCGGAtcttgcttttgattttgaaggATACATCTTCATTTTTCTCAATGACCTGTTCACAGCTGCCAGTGGAGTGTACACCAAAAAGAAACTTGACTCCTCTGAGGGTCTTGGAAAATATGGGGTGCTGTTCTACAATGCATGCTTTATAATAATACCTACCATCCTAGCAAGCTTGTATACCGGAGACCTGCAAAAGGCCATTGCTTTTGATCACTGGATGAAATACACCTTCGTTTGTCACTTCCTGTTGTCTTGTATTTTGGGGTTTGTTCTGATGTATTCCATCGTGCTTTGCAGCCATTACAACTCGGCCCTCACAACTACAaACGTGGGTGTGGCTTACATCGGCATGTTTGTGGGGGGAGACTATCATGTCTGGAGGGCTCACGTATTCCTTCTTTACGTTCCGAAGCAATTCACGCATTTCAACTTCAACATCCGGCAGTGATCATGAGTTAAGCAAAGGTCAAAGTACTTAATGTTCAGATGGCATTACAGATCATTCAAAAACCGTGAATGTGTTCATATGACACCTGTTTTTGCAGAAATTGTTAGTCTCAAAACACTTTTATGGAGCTGTGTTGACGACATTATCCATCCCTGgttttgtttacaaatattgttttgccTTTATGGTGCGTTTATGGAGTgtactaaactaaactaaaggcaaaacgccccaagaacaagcaggaactaaagacagctgcagtgcaggcctggcagagcatcaccagggaagaaacccggtatctggt

Function


GO: NA

KEGG:

id description
K15281 SLC35D; solute carrier family 35

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU100916 lncRNA upstream 249896 30766337 ~ 30814741 (+) False AMCG00010467
TU100917 lncRNA upstream 249896 30766337 ~ 30814741 (+) False AMCG00010467
TU100911 lncRNA upstream 249896 30792963 ~ 30814741 (+) False AMCG00010467
TU100830 lncRNA upstream 545009 30517273 ~ 30519628 (+) True G80830
TU100718 lncRNA upstream 757250 30306485 ~ 30307387 (+) True G80746
TU101022 lncRNA downstream 35440 31107060 ~ 31107603 (+) True G80988
TU101023 lncRNA downstream 38148 31109768 ~ 31110142 (+) True G80989
TU101064 lncRNA downstream 487096 31558716 ~ 31627547 (+) True G81020
TU101072 lncRNA downstream 700534 31772154 ~ 31772357 (+) True G81026
TU101077 lncRNA downstream 850129 31921749 ~ 31922050 (+) True G81029
AMCG00010476 mRNA upstream 24444 31037640 ~ 31040193 (+) True AMCG00010476
AMCG00010475 mRNA upstream 51809 30993603 ~ 31012828 (+) True AMCG00010475
AMCG00010474 mRNA upstream 137097 30892385 ~ 30927540 (+) True AMCG00010474
AMCG00010467 mRNA upstream 247034 30793128 ~ 30817603 (+) True AMCG00010467
AMCG00010470 mRNA upstream 305837 30739193 ~ 30758800 (+) True AMCG00010470
AMCG00010480 mRNA downstream 11263 31082883 ~ 31087934 (+) True AMCG00010480
AMCG00010483 mRNA downstream 42902 31114522 ~ 31119247 (+) True AMCG00010483
AMCG00010486 mRNA downstream 358089 31429709 ~ 31589396 (+) True AMCG00010486
AMCG00010484 mRNA downstream 844964 31916584 ~ 31921133 (+) True AMCG00010484
AMCG00010485 mRNA downstream 853302 31924922 ~ 31938388 (+) True AMCG00010485
TU100533 other upstream 1561186 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 3157808 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 3189706 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 3507630 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 4670115 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 2832195 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 3629818 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 3940695 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 4398715 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 5005493 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile