RNA id: AMCG00010480


Basic Information

Item Value
RNA id AMCG00010480
length 1845
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00010480
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 31082883 ~ 31087934 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAGGGGTCGAGTCGTACATAAAGAAACCGCCATGTTGTCAGTTCACCTGTTAACCTGCAGCATCATCAGCGACACAGGCAGCGGAAAGTGAGGGTAGGAATTACAGACAAACAGAGGATGAACGCGTCGGTCCCCCTCAGCTCCTAAAGCAGAGCAAGAATTTGGACATTTTCTGCAGCCCCCCCGCGGTGGAATTAGGTTTTGAGCAATTTCGTTGGCAATGAAGGCAGTGGTCAGCAGCCCGGTCTCCCCCATCATGCAGGAGAGTTTCGGGTGCGCCGTGATGAACCGCTTTGAGCAGCTGCTGGATGACGAGGCGGACCCCTTCGACATCCTGCGGGAGGCCGAGGCggacaaaaagaagaaaaagaagaaggaagagaagaaagGCAGCGGCAATGCGGCGAAATCCGGCAAGAGGGAATCCCAGAAAGACCGAAAGATCCCCGTGTTTCTCGGAGGCGACGGTGATGACGCGCAGGCGAGGAGCACTATGGTTCCTGGCCAAAAGCGCCCCCCTCGAGGCCCTGGGCTCTTGGGCCAGAACGAGAACCGAGGGATGGAAGTGAAGGTGGAGCGCAGTGAGAGGCGCGTGGTGTTCAGGGAGCGGCGGCCCAATGAGCTTGAAGCTCCTCAGGAATTCTCTGTGGAGAAGCCGCTGGAGCAGGTTGACAGAGGGATGCGGGGCCGCGGGGGAGGCCGAGGAGGAATGCGAGGCAGGGGAGGGAGAGGTGGTGGATTTCCCCGGAATTTCGATGGGTTTGACCAGAGGGGCAAACGAGAATTTGAACGCCACAGCGGAAGTGACCGAGCGGGTATTAGGCCTGAGGAAAAACGTGGAGGAAATGGATCTCGTAACTGGGGATCTGTAAAAGATGAAATGAgTGAAATGGAGCAGAGTGCCCCAAATGAGGAGGCTGGAGATGCCGAAGAGGCTCCTGATGTCCCCGAGGCAGACCCAGAGAACCGTGGCGTGGACGGTGACGGAGAACCATTTGACGAAGTTGCTGTGGAGATGACTCTGGATGAGTGGAAAGCGCTACAGGCACAAAGTCGGCCAAAGAAGGAATTCAACATTCGCAAGCCAGAGACCAGCGTGCCTTCCAAGGCTGTTGTGATTCACAAGTCTAAATACATCGATGAACTGAAAGGAGAATCTgacgaggaggatgaggatcACCACTACTTCCGGAGGCCAGCCAATGACATCACCTCCCAGTTGGACATTAACTTTGGCAGTCTGTCCCGGTCAGGCCGTGGGGGCCGTGGAGGGCGGGGTGGGCGAGGCCGTGGGGCGGTTGCTAGGCCGGAGGCACCCCCACGCCCTGAAGTGCCACAAGTTCTGGCTCCCAACCCTGATGACCCAGAGGATTTCCCAGCCCTGGCCTGAGGTTGGACTGAAGAGGCTGGAGTGTATTTGGGAGCTTGTGATATGGTGTTGAATTTGAAAGTGACTGACCAAGCCTCCCAGCTGCTGAATTTTGCCTCTTGATTAATTGGTTGCACTTGTGACTAACACAATGGTTTTTGTTCATAACTGTTACAaagaactatatatttttcaaagcattaatGTCTGCTTACTGTATAGTTTGAAAGCTGTAACTCACTGTAATGGGAAATCTAAATACAATtgaactgtataaataaatgcactatTGAGAATGGGACTTGATTCTTCCTGCTTGTAAAGGGGGGCCAGCAAGATGAACACCACTCCTTTCTGCACTTTAGTGGGTGAACCATTCCACTAGATGTGTAAAGGTCTGCTTCAAGGGATGTTTTCTTGAATGGTAAAGTCAGGGGGAAGTGTAATTTATGCTGCTTTGGCTTTTTGAGTGGC

Function

GO: NA

KEGG:

id description
K19019 HABP4; intracellular hyaluronan-binding protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100997 lncRNA upstream 12356 31046726 ~ 31070527 (+) True G80969
TU100916 lncRNA upstream 268142 30766337 ~ 30814741 (+) False AMCG00010467
TU100917 lncRNA upstream 268142 30766337 ~ 30814741 (+) False AMCG00010467
TU100911 lncRNA upstream 268142 30792963 ~ 30814741 (+) False AMCG00010467
TU100830 lncRNA upstream 563255 30517273 ~ 30519628 (+) True G80830
TU101022 lncRNA downstream 19126 31107060 ~ 31107603 (+) True G80988
TU101023 lncRNA downstream 21834 31109768 ~ 31110142 (+) True G80989
TU101064 lncRNA downstream 470782 31558716 ~ 31627547 (+) True G81020
TU101072 lncRNA downstream 684220 31772154 ~ 31772357 (+) True G81026
TU101077 lncRNA downstream 833815 31921749 ~ 31922050 (+) True G81029
AMCG00010477 mRNA upstream 11263 31064637 ~ 31071620 (+) True AMCG00010477
AMCG00010476 mRNA upstream 42690 31037640 ~ 31040193 (+) True AMCG00010476
AMCG00010475 mRNA upstream 70055 30993603 ~ 31012828 (+) True AMCG00010475
AMCG00010474 mRNA upstream 155343 30892385 ~ 30927540 (+) True AMCG00010474
AMCG00010467 mRNA upstream 265280 30793128 ~ 30817603 (+) True AMCG00010467
AMCG00010483 mRNA downstream 26588 31114522 ~ 31119247 (+) True AMCG00010483
AMCG00010486 mRNA downstream 341775 31429709 ~ 31589396 (+) True AMCG00010486
AMCG00010484 mRNA downstream 828650 31916584 ~ 31921133 (+) True AMCG00010484
AMCG00010485 mRNA downstream 836988 31924922 ~ 31938388 (+) True AMCG00010485
AMCG00010495 mRNA downstream 1021973 32109907 ~ 32126004 (+) True AMCG00010495
TU100533 other upstream 1579432 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 3176054 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 3207952 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 3525876 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 4688361 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 2815881 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 3613504 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 3924381 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 4382401 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 4989179 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile