RNA id: AMCG00010483



Basic Information


Item Value
RNA id AMCG00010483
length 837
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00010483
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 31114522 ~ 31119247 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGCCATCTTCTTTCGAAAAATGGTAAGCGTGTGAAGAAGAGGAAACGAAAACTGCGGAAGAACTGCTTTCTGCACGGGCCGTGCATGCTGTGCTTCATTGTGCACAACAGCGGCAGCCTTGACGAGGACCAGCTTGAGAGCGCTTCCAAACTTGCTGAGAGGTACGCCACACTTAGTTCCCCCGAGGACTGTGCCAAGTTTCTCCTGTCCCCCAAGGAGCTTGCCATCTGGGAGGAGCAGGGCAAGAGCCTGCTGTCCAGCGTTCCGGCCAAGCTCATCGGGCCCCAGCTCTTCCGAACCGTCTCCAACGAGTACTCTGAGATGGTCTGCAAGCGAAAGTGCACAGGGGTACAGAGGTGCACACCCTGCAAACAACCGAGATGCACTTTCCAAGAGGTGACGGAAAACGGTGCTGGTGGTGACTCGGCGGCCCAGTGCCACATCCCTCTGTGCCCTCTGCCTTCCTCGTCCTCGGACGGCTCCAACGTGGGCCTGCAGACAGACTCGGGGGAAAGCCCAGACGTCACTGGTAGCACCGCAGCCCTGCAGAGCTCCTCCGAGAGCAGCCAGCTTACGCCAACTGACAACCAGAGTGACAGTAAAGCGTTTGAGACTGACATTCCCAGCATCAATCACCTCCCATCATCAATCCTTCTGAAGCTGGGAGTGCACTGCTCAGAACTGAAGGATGTCCACTTTGGCCAGTGCTACAGCATAACTGACGAAGGCATGGTGGCTCTAGCAAAGGGATGCCCAAAGCTGCAAAGAATCTacatgcaagaaaacaaactggtATGTCTCCTCCAATGCAGACTGCATTGTTACAAGTTGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101023 lncRNA upstream 4380 31109768 ~ 31110142 (+) True G80989
TU101022 lncRNA upstream 6919 31107060 ~ 31107603 (+) True G80988
TU100997 lncRNA upstream 43995 31046726 ~ 31070527 (+) True G80969
TU100916 lncRNA upstream 299781 30766337 ~ 30814741 (+) False AMCG00010467
TU100917 lncRNA upstream 299781 30766337 ~ 30814741 (+) False AMCG00010467
TU101064 lncRNA downstream 439469 31558716 ~ 31627547 (+) True G81020
TU101072 lncRNA downstream 652907 31772154 ~ 31772357 (+) True G81026
TU101077 lncRNA downstream 802502 31921749 ~ 31922050 (+) True G81029
TU101161 lncRNA downstream 1187046 32306293 ~ 32308293 (+) True G81089
TU101177 lncRNA downstream 1253216 32372463 ~ 32372866 (+) True G81103
AMCG00010480 mRNA upstream 26588 31082883 ~ 31087934 (+) True AMCG00010480
AMCG00010477 mRNA upstream 42902 31064637 ~ 31071620 (+) True AMCG00010477
AMCG00010476 mRNA upstream 74329 31037640 ~ 31040193 (+) True AMCG00010476
AMCG00010475 mRNA upstream 101694 30993603 ~ 31012828 (+) True AMCG00010475
AMCG00010474 mRNA upstream 186982 30892385 ~ 30927540 (+) True AMCG00010474
AMCG00010486 mRNA downstream 310462 31429709 ~ 31589396 (+) True AMCG00010486
AMCG00010484 mRNA downstream 797337 31916584 ~ 31921133 (+) True AMCG00010484
AMCG00010485 mRNA downstream 805675 31924922 ~ 31938388 (+) True AMCG00010485
AMCG00010495 mRNA downstream 990660 32109907 ~ 32126004 (+) True AMCG00010495
AMCG00010496 mRNA downstream 1043018 32162265 ~ 32173395 (+) True AMCG00010496
TU100533 other upstream 1611071 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 3207693 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 3239591 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 3557515 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 4720000 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 2784568 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 3582191 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 3893068 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 4351088 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 4957866 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile