RNA id: TU101202


Basic Information

Item Value
RNA id TU101202
length 3416
lncRNA type read_through
GC content 0.36
exon number 2
gene id AMCG00010497
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 32474033 ~ 32530266 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttttttttttttttttattttttttttttttttttttttttttttaatagctgcATCATTAAGTGGATGTTTCTGGACTATAGAAAACTGCTCTCCAGATCTGGGTTTGCATCACTTACTGTTCCACTCGGTTCAGAATGTCCATTGTTGTGGGGCTgagaataaaactgaaatatttattttcttcctacaATGTTAATGTTGGGGTTGTGACCTTGGGTTTGACACTTTGTGCattatgattttaatgattttagtGCATCCTAGATTTAAATATGACAACTTGCCAAGGCACATGgcaaaggtaaaaaaaaagtcaacttCCAGCCATATTATAGACATGAATGCAGGCTGTAATGTCATTTGGGAGAGTTTGATATCTAAAAGACCTGCCAGACCTTATGTAAGACAAATAGTTTTGGTCCCCAGCAGGGGATAGGACTAGGTGACCCTCCTGCCTAGGCTGGGCTCTTGTGTGAGGACCTGTGAGCCGTTTGCATCGTCTCACCAGCGTGGTCCTGTGATTTGCAATCATGAAAGAACTTGGGTGGTGTTGGTTCACCTCTCTGTGCAACAGTGAAACCTACGGATCGTGTCTGATAAAGCCAGGTGGACACTGCAGCAGACCAGGCTGGCCTTGTGTCTATTGGCAGCTTAGTCTTGTTTGCCACATTATTAGGAAAGATGGGTCAGAAAATATGAGGGTTTCAAATTGCCAGTCCTCCTGGTTCATGATCTGTCATACTTGAGGTGAAGAAGTGGCTTTCAAGTTGCATAATGaagtcaacaaaaaaaaacattgcatttagaAAACATGGCAGGCATAGTGGGCTGTGTATTGGGTTCCGTTTATGCCTTCAAATGAATTCTGATGCATTTCGTTGTCTAATGTTTTTGATGCactaaaatatacttttcacTAATTTCCTCTTATTCTCGTTGGATGCTTttggagtgggggtgggggagaaagTTACTCCAGTcctgctcctctccctcccactAAAGTCcaagtgtttttgttaatgtaattctgtaaaatgtatccaACCTCATTGCAAAGACATTAAGGAGTATACATCTGTTGCTAACTTTTACTATgttatacagtatttatctatttgtacCCTACTTAAAGGTAAATGGTTATCTGGTGTTATTTAAGTAAGGGGATCTTGTTCCCtcctgtttttcaaatgaatacattcaccTAAACATcaggtttacttttttttttttttgggggNNNNNNNNNNNNNNNNNNNcttcaaagaaaatgttcaTTTCAACTATGCATGGGAAATATATGCTCCTATAGATGACCTGCTTTGTGGaacattatttttgattttggtttattttatttcaagacCTGTCTTATGTTCATGTTGTATTCCATATTTGCTTTGAGTATCACGTGAATGTTGTAATATAGGACAAAATAACTAATCCCAAGAAAACCATGCTGTTGACACCATATATAGGTTTTAATGTTGACAAGACCTAAGAGTGGTCATCAAAATGTGAACAAGTGTTTGCTCTAATGTGTATagatccaatccaatccaatgtATTATATTCACCCCTTATCCTAAGTTTTGCTGAAACTGTCACTATGTGCATATTGTTGTAATGTTTGAACTGTGCTGTGAATAGCAGCTGTGCATAGCATTTTCTGTTGCATAATCACCTGatacataatgataatattgGTTCAGTGACGGTAAGACATAGGCTTGTTGTTTCCAGGTAGTGAGGTGAGAACAATCAAACCACACTGTTTAATTGGCTGAAGCATTCAAACCAGGTCAGAATCAATGTTCCTTTAAACACAGATAGCAACTACTTTCAACAAGCAAACAACTAGTGCAGTAATAGTTTGAGAGGTTAAGGAgggtaatgtaaaatattactCTTATGAAGCCCACGGTTTTGTGTTAAaggctttttgtgttttgctttctcAAGGAGGTAGCTGGTTCCTGAATTCTTATTTCTGTGCAGCAATAAACTAAAGGTACATCAAGCATGTTCCATTTATCAAAATCTAACACTTGGATGCAGTCAAAGATAAAGTAAGACTTCCAGGGACTTAAACATTCCTGTTTGTTAATGTGAATTTTGTTAGATATTTAGAAccttttgcattttctgtttgtattgtgAAATTATTCTGAACATAACATGTGCATCTTGTTACCCATGTAGATGCTTATACAGGAAATGGTAGCACAATTAAAAATTTAAACAGATTTCCATCAAATGCTATTATGTGTCCATAAAACAAGATTTTTAAATtggcattttcattattttaagtaagCATGCCAGTAAATAAAATTTGTACAGAtctgaaaaaaatgttgaagAAATGGAAGCAAAAgggttttaattttagtttttcagtattttgtcATGGCTTATGTAAAATTCTTTATTGACTGAATGTGTTTCTAGATCCTAGAATACATAAACTTAAGAATTTATTAGCTCACCAGATTGGTGTTTTCAGATTCTCTGGGTGCTTTAGTGTTAATGCCTTTTTGATATCCAATATAACCATGAAGCACCTATTAATTTACCAAACCCTTTTTCAGTTGGTTTCTTTGAATTCACCAGAACATGGTCTTGCATTCTGGATGGGGGACTAAAACCCTTGAACGTGTCTGGCGTGCACTAGATGTGGTACGAACAATAACAAATTAAGACGCCTTTATTCTATCCATTACTGTTCTGATCATATTGCATGTACTGTACAAGATACAAGATACCTGTTCAGGAAATTGGATTTCCAGAATGATGTCAAATGTTGCTAAAATTGGGAATTCAAAACATTCCAAAATGTTAGTTTTGTTGTGAAAATGTGcataaatacagtgcatccatACAACTGAACAGTTGTCGGTTGGCAATTTGAAAGGTGTCCTTAAAATATCTATGAATAAAGGTATTGATCATACAGTAATAATACGTTAAACTGAGGGTGTCTAAGTTGCGGAAGGGGGGTCATGTGCCTTGATTTCAATGGACCTGGTATTTGTGTTGCTCAGAAATGTACTTGCACAGTATAACCGATGGGAATGGGTGTTCATTAGAGATGATGCTTTAGCTCAGCTTCTTGATTGCAGGTTTTTACGTCcctaatatattaaattgtctCCAGTAAGGTTGGTCTTTCTTCACCGGTGAAaccacaagaaagaaaacaattgttGCTAACTTTAGAGTGGTTCTAAGTTCTCAAATGGTAATATtcacaaattcaaatacattttgtaacttTAAAATGGCATTGTATAGGAAACCTGTTTGATCTGAGCCTTAATAAAAACTGGGGAAATATAAAGGGTGTGGGTGTGGTTTCTGAAAGTCTGCTGTATGTAGGTTTGCCATGgtgtattataaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101189 lncRNA upstream 5770 32467842 ~ 32468263 (+) True G81115
TU101177 lncRNA upstream 101167 32372463 ~ 32372866 (+) True G81103
TU101161 lncRNA upstream 165740 32306293 ~ 32308293 (+) True G81089
TU101077 lncRNA upstream 551983 31921749 ~ 31922050 (+) True G81029
TU101072 lncRNA upstream 701676 31772154 ~ 31772357 (+) True G81026
TU101243 lncRNA downstream 46383 32576649 ~ 32674654 (+) True G81149
TU101326 lncRNA downstream 437995 32968261 ~ 32968507 (+) True G81215
TU101342 lncRNA downstream 496631 33026897 ~ 33027960 (+) True G81226
TU101405 lncRNA downstream 780586 33310852 ~ 33315569 (+) True G81279
TU101487 lncRNA downstream 1406148 33936414 ~ 33938237 (+) True AMCG00010529
AMCG00010493 mRNA upstream 190263 32252441 ~ 32283770 (+) True AMCG00010493
AMCG00010496 mRNA upstream 300638 32162265 ~ 32173395 (+) True AMCG00010496
AMCG00010495 mRNA upstream 348029 32109907 ~ 32126004 (+) True AMCG00010495
AMCG00010485 mRNA upstream 535645 31924922 ~ 31938388 (+) True AMCG00010485
AMCG00010484 mRNA upstream 552900 31916584 ~ 31921133 (+) True AMCG00010484
AMCG00010501 mRNA downstream 135250 32665516 ~ 32689744 (+) True AMCG00010501
AMCG00010503 mRNA downstream 275342 32805608 ~ 32823998 (+) True AMCG00010503
AMCG00010502 mRNA downstream 315125 32845391 ~ 32857825 (+) True AMCG00010502
AMCG00010513 mRNA downstream 510729 33040995 ~ 33057801 (+) True AMCG00010513
AMCG00010512 mRNA downstream 547565 33077831 ~ 33091942 (+) True AMCG00010512
TU100533 other upstream 2970582 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 4567204 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 4599102 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 4917026 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 6079511 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 1373549 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 2171172 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 2482049 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 2940069 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 3546847 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile