RNA id: AMCG00010512


Basic Information

Item Value
RNA id AMCG00010512
length 1731
RNA type mRNA
GC content 0.44
exon number 11
gene id AMCG00010512
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 33077831 ~ 33091942 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATCCCAGATCCAAAAAAGGTGTTTATCTAAGTAAAACTACTGTACTCCTGTTCATGATACTGTTCGCTGCTGTGTTGATTGGGTTTACAGTTTTGGCAGCTCTTTACGCCGGATCCAGGGGTGCTCATGAAAACCGCACAGATGGGAAAGAAGCAACAGCTACCAGTCAAAGTGTGATCCCCACGTCCACAGTCCATCCCGCAGAGCCGCAGATCTGGGACAGTTACCGACTGCCCCAGACGCTGGCTCCCACTCACTATCAGCTCCAGCTGTGGCCACATCTGCAGCCTGATGAAAACGGCCATTTCCCTTTCACCGGCGAGGTCAACATCACCTTTCACTGCAAAGTAGAAACGGATCTAATCGTGCTGCACAGCCAACAACTCATCAACTCAGGTGTGGAGCTGGAGGCAGTTGGAGATGATCCAGATGTCCCCCGGGTCCTGGACACCTCCTATTCCGACTTGTATTCCTACCTGATCCTACGGCTGTCCAGCCCTTTAAAGAAAGGCAGAGATTACCGATTGAACATATTGTTTTCTGGATATATTGAAACCGAAGAAATGTTTGGGCTTTATGTCACTCCTTACCTGGAATCCGGACAAGAAAAGATATTGGCTTTAACACAAAATGAGCCAACCTATGCACGAAATGTGTTTCCATGCTTTGATGAGCCTGCAATGAAAGCTACATTTGATATGAGGATTGTGCATCGGCCCATATTTGTTGTACTTTCAAATATGCCTCCTATTGATGTGGTTGCAGTGCCTGAATTCTTTGCAAGTGGCATGGAGAACTGggggattattattttcaaggaggatgctttgttttataattctAGCAGCCATTATCagaataaagaatacatttgcagtATCGTGGCCCATGAACTGGGACATCAGGCAATTACCATGAACTGGTGGAATCAAATATGGCTCAATGAGGGACTGTCAACATATGTTGAGTACATGATTCCTTACGATGTGGAACCTCTGCTGCAAGAGATAGAAAAGGATTATGTCCAGGACATCCAAATGATGCTTGACAgagattcattttattttccccattcacTAACTGTAAAGGAGAACAAGGTTGAAAGTAACACTCAGATACAGAGATTATTTTCTCGGTTGACTTATACAAAGTCCTACCTTCAGGCCTTCTCCTACATGAATGTTGAGCAGGATGACCTCTGGATTCACTTACAAATGgCTGCAACCAGTCAACCAGAACTACAACTGCCAGCATCAATAAAAGACATTATGGACTCTTGGACGCTGCAGCCAGGATATCCAGTTATTTCACTGAACACAACGACAGGCATTGTCACTCAGGAGCCGTTTGTCCActtaacagaagaaaacaataccACCCTGGAAAAAGTTATATACGACCAAGCAAACATTGAAAGATTGCAGCGTCAGTTGATGAAAGATCCAAATaaaaTACCAGTGTGTAACAGGGCACAGATCATTGGTGATGCCTTTCAATTAATGGTGACTGGGTTGCTAGATGCTGGAACTGCTTTAAGCACAACTGCATATCTGTCAGGGGAGAAAGAGTTCCCGCTCTATAtagaaaactatatttattgTTATGGAATAGCGAGTGGAGGAGAACAAGAGTGGGAGTTTGCCATGAAGAGACTTCAGGACCACAATGAAACCAACGTAATCCAAGCCTTGGGCTGCACCAAAGAACCATGGCTTTTGAAGAggtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101342 lncRNA upstream 49871 33026897 ~ 33027960 (+) True G81226
TU101326 lncRNA upstream 109324 32968261 ~ 32968507 (+) True G81215
TU101243 lncRNA upstream 403177 32576649 ~ 32674654 (+) True G81149
TU101202 lncRNA upstream 547565 32474033 ~ 32530266 (+) True AMCG00010497
TU101189 lncRNA upstream 609568 32467842 ~ 32468263 (+) True G81115
TU101405 lncRNA downstream 218910 33310852 ~ 33315569 (+) True G81279
TU101487 lncRNA downstream 844472 33936414 ~ 33938237 (+) True AMCG00010529
TU101528 lncRNA downstream 940762 34032704 ~ 34035798 (+) True G81372
TU101539 lncRNA downstream 1010896 34102838 ~ 34104640 (+) True G81383
TU101567 lncRNA downstream 1104125 34196067 ~ 34196426 (+) True G81407
AMCG00010513 mRNA upstream 20030 33040995 ~ 33057801 (+) True AMCG00010513
AMCG00010502 mRNA upstream 220006 32845391 ~ 32857825 (+) True AMCG00010502
AMCG00010503 mRNA upstream 253833 32805608 ~ 32823998 (+) True AMCG00010503
AMCG00010501 mRNA upstream 388087 32665516 ~ 32689744 (+) True AMCG00010501
AMCG00010497 mRNA upstream 550933 32508815 ~ 32526898 (+) False AMCG00010497
AMCG00010510 mRNA downstream 10018 33101960 ~ 33103367 (+) True AMCG00010510
AMCG00010511 mRNA downstream 13990 33105932 ~ 33109710 (+) True AMCG00010511
AMCG00010519 mRNA downstream 446908 33538850 ~ 33583439 (+) True AMCG00010519
AMCG00010517 mRNA downstream 509601 33601543 ~ 33608079 (+) True AMCG00010517
AMCG00010518 mRNA downstream 525080 33617022 ~ 33638956 (+) True AMCG00010518
TU100533 other upstream 3574380 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 5171002 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 5202900 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 5520824 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 6683309 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 811873 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 1609496 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 1920373 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 2378393 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 2985171 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile