RNA id: AMCG00010517


Basic Information

Item Value
RNA id AMCG00010517
length 1954
RNA type mRNA
GC content 0.42
exon number 2
gene id AMCG00010517
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 33601543 ~ 33608079 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCAGAAGTAAAAGGCATGTGCTGTCAAATTAACTCCACCCTGTTCGGGAGCTGGGGAAGTAGAAGTGTAAGGAAGAGAATCTGTTTGCTGATTACACTTGAGACAGCAGAGCTTGTCTCAGACACTGGGCTGTAGTCGCATTTGTGGGAGATGGAATCCACTTTCATGCACCGATATTTCATTTGCTGACTTCACAGAATTTGTTAAACTTGGACTGGccctccttttttttaaatttgggtACGGAAGTTAAATGCTTCTGCTTTAAGTGCACATCGGCTGCATTCCAGTCTCCGTGTGTTCCACCACAAGCATGAGCTCTGAAGCAGATGAAGTGGCCACAGATGTCTTCAATTCAAAGAGCCTGGCGGTTCAGGCGCAGAAGAAGATTCTGGGGAAAATGGCCTCCAAGTCCATCGCCACCATCCTGATAGATGACACCACCAGCGAAGTCCTGGACGAGCTCTACCGAGTGACCAAGGAGTACACACAGAGCAAGAAGGAGTCCGAGAGGATCACCAAGAACATCATCAAGATCGTCATCAAGCTGGCGGTTTTGTTCAGGAACAACCAGTTCAACGAAGAGGAGGTTGCGCAAATGGagaagctgaagaaaaaaatccacGTTTTGGCCATGACTGTCATCAGCTTCCACCAGGTCGATTACACCTTTGACCGCAACGTTCTCTCCAAACTGTTGAACGAATGCAGGGAGTTGCTTCACACGATCATAAACCGGCACCTCACAGCGAAATCCCACGGACGCATTAACAATGTGTTTGATCATTTTTCGGATTGCGAGTTCCTAGCCACGTTGTACAACCCTTTTGGACCGTATAAACCTCATTTGGAAAAAATGTGTCATGGTGTCAATAAAATGCTAGACGAGGGAAACATCTGAGCATTTCCTCTATTTCCAGAGCAGTTTCTTTGACAAAGAACACAGCTGGCTGAAGAAATAGGGGACACTAGCAGGACTGAAAGAATACAATATCCTGTGCACCGGACATGGACCATTTATATACCTAAATGAATGCCTCTGCTTATGCGTGTATTGAATACAACCCACTTTGCCactttgctgtgctgtgctgagaagaatatatatttgtatcatatTGCTCAAAGCAAGCATGATCAGTGGGGAGGCCTGTTGATCACGGCATAGTAGTAGAGTGACTGTGATGGAGTATAGAACTAATACATAGGGACACAGAAGTGCTGGAAATACTCTTAACATCATGCAATACGTTTAAGTTAAAGCTAGAAAACCAAATCCTGTTCTGCCTTGTGATCAAAACACAAGGGGACAATGCTGgggtgaggggtgggggggatctCAGCCAGACTGCCAAATATCTGGTTTGGTAGGATAGATTGTTGGAATGTAACGAGGGAGCGTTGCACCAAAAATAGTTGAACATGGTTGTGGTGCACCGTGAGTTCACCATGCCCTGCTTCACACTCTGTGACTGTTATGAGCGATTTCACATCTTCTGTGCTACAATCATTTTGATTCCAAATAAgttaaattcagttttattctGACCGGAGACTATATTTATAAaggagttttaaaaatacatgtcttTTACTAAATTACTTGGGAATTGAAACTTGATGACCTCCAGCTATTGAATGTGGAAAACTACTATTCTGTATTATGCAATAAAGTCCAGAAAGTAGGCTAAATGctgtaatatattaaatgtgaCAACAAGGAgcgatttgttttttttttaagaagcatGATTCATCTCAGATATGTATCTGCAAAACTGTTGCATTCTGAATAAGTACAACCACATAGATGCTAATCagtcatgtttaatattttagaaGCTATACAGtgtaacatgtattttgtgataCGTGAACTGTAGATATTTCACTCATGCTAATGTGATGTGGAAATTTGCtgtgaacagtttttttttttttattattgccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101405 lncRNA upstream 285974 33310852 ~ 33315569 (+) True G81279
TU101342 lncRNA upstream 573583 33026897 ~ 33027960 (+) True G81226
TU101326 lncRNA upstream 633036 32968261 ~ 32968507 (+) True G81215
TU101243 lncRNA upstream 926889 32576649 ~ 32674654 (+) True G81149
TU101202 lncRNA upstream 1071277 32474033 ~ 32530266 (+) True AMCG00010497
TU101487 lncRNA downstream 328335 33936414 ~ 33938237 (+) True AMCG00010529
TU101528 lncRNA downstream 424625 34032704 ~ 34035798 (+) True G81372
TU101539 lncRNA downstream 494759 34102838 ~ 34104640 (+) True G81383
TU101567 lncRNA downstream 587988 34196067 ~ 34196426 (+) True G81407
TU101639 lncRNA downstream 1071897 34679976 ~ 34680716 (+) True G81474
AMCG00010519 mRNA upstream 18104 33538850 ~ 33583439 (+) True AMCG00010519
AMCG00010511 mRNA upstream 491833 33105932 ~ 33109710 (+) True AMCG00010511
AMCG00010510 mRNA upstream 498176 33101960 ~ 33103367 (+) True AMCG00010510
AMCG00010512 mRNA upstream 509601 33077831 ~ 33091942 (+) True AMCG00010512
AMCG00010513 mRNA upstream 543742 33040995 ~ 33057801 (+) True AMCG00010513
AMCG00010518 mRNA downstream 8943 33617022 ~ 33638956 (+) True AMCG00010518
AMCG00010520 mRNA downstream 51738 33659817 ~ 33670180 (+) True AMCG00010520
AMCG00010529 mRNA downstream 326516 33934595 ~ 33937940 (+) False AMCG00010529
AMCG00010524 mRNA downstream 342883 33950962 ~ 33954615 (+) True AMCG00010524
AMCG00010523 mRNA downstream 367123 33975202 ~ 33999854 (+) True AMCG00010523
TU100533 other upstream 4098092 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 5694714 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 5726612 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 6044536 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 7207021 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 295736 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 1093359 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 1404236 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 1862256 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 2469034 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile