Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00010518 |
| length | 1260 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 11 |
| gene id | AMCG00010518 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030129.1 |
| NCBI id | CM030129.1 |
| chromosome length | 41163702 |
| location | 33617022 ~ 33638956 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0032934 | sterol binding | molecular_function |
| id | description |
|---|---|
| K12405 | HSD17B4; (3R)-3-hydroxyacyl-CoA dehydrogenase / 3a,7a,12a-trihydroxy-5b-cholest-24-enoyl-CoA hydratase / enoyl-CoA hydratase 2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU101405 | lncRNA | upstream | 301453 | 33310852 ~ 33315569 (+) | True | G81279 |
| TU101342 | lncRNA | upstream | 589062 | 33026897 ~ 33027960 (+) | True | G81226 |
| TU101326 | lncRNA | upstream | 648515 | 32968261 ~ 32968507 (+) | True | G81215 |
| TU101243 | lncRNA | upstream | 942368 | 32576649 ~ 32674654 (+) | True | G81149 |
| TU101202 | lncRNA | upstream | 1086756 | 32474033 ~ 32530266 (+) | True | AMCG00010497 |
| TU101487 | lncRNA | downstream | 297458 | 33936414 ~ 33938237 (+) | True | AMCG00010529 |
| TU101528 | lncRNA | downstream | 393748 | 34032704 ~ 34035798 (+) | True | G81372 |
| TU101539 | lncRNA | downstream | 463882 | 34102838 ~ 34104640 (+) | True | G81383 |
| TU101567 | lncRNA | downstream | 557111 | 34196067 ~ 34196426 (+) | True | G81407 |
| TU101639 | lncRNA | downstream | 1041020 | 34679976 ~ 34680716 (+) | True | G81474 |
| AMCG00010517 | mRNA | upstream | 8943 | 33601543 ~ 33608079 (+) | True | AMCG00010517 |
| AMCG00010519 | mRNA | upstream | 33583 | 33538850 ~ 33583439 (+) | True | AMCG00010519 |
| AMCG00010511 | mRNA | upstream | 507312 | 33105932 ~ 33109710 (+) | True | AMCG00010511 |
| AMCG00010510 | mRNA | upstream | 513655 | 33101960 ~ 33103367 (+) | True | AMCG00010510 |
| AMCG00010512 | mRNA | upstream | 525080 | 33077831 ~ 33091942 (+) | True | AMCG00010512 |
| AMCG00010520 | mRNA | downstream | 20861 | 33659817 ~ 33670180 (+) | True | AMCG00010520 |
| AMCG00010529 | mRNA | downstream | 295639 | 33934595 ~ 33937940 (+) | False | AMCG00010529 |
| AMCG00010524 | mRNA | downstream | 312006 | 33950962 ~ 33954615 (+) | True | AMCG00010524 |
| AMCG00010523 | mRNA | downstream | 336246 | 33975202 ~ 33999854 (+) | True | AMCG00010523 |
| AMCG00010526 | mRNA | downstream | 400823 | 34039779 ~ 34057802 (+) | True | AMCG00010526 |
| TU100533 | other | upstream | 4113571 | 29494617 ~ 29503451 (+) | False | AMCG00010431 |
| TU100171 | other | upstream | 5710193 | 27906497 ~ 27906829 (+) | True | G80326 |
| TU100109 | other | upstream | 5742091 | 27869457 ~ 27874931 (+) | False | AMCG00010393 |
| TU100084 | other | upstream | 6060015 | 27556415 ~ 27557007 (+) | True | G80249 |
| TU99961 | other | upstream | 7222500 | 26380467 ~ 26394522 (+) | False | AMCG00010369 |
| TU101485 | other | downstream | 264859 | 33903815 ~ 33935416 (+) | False | AMCG00010529 |
| TU101662 | other | downstream | 1062482 | 34701438 ~ 34707394 (+) | True | G81496 |
| TU101759 | other | downstream | 1373359 | 35012315 ~ 35012693 (+) | True | G81576 |
| TU101832 | other | downstream | 1831379 | 35470335 ~ 35477584 (+) | True | AMCG00010562 |
| TU102021 | other | downstream | 2438157 | 36077113 ~ 36079892 (+) | True | AMCG00010578 |
