RNA id: AMCG00010523


Basic Information

Item Value
RNA id AMCG00010523
length 3786
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00010523
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 33975202 ~ 33999854 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATTGGTGATACCACAGGACCCCTGCTTCACATAATGCTTCTGCGGAGAAATAATGGATACCCCTGAGTACCTGGATTTGGATGAAATTGACTTCACTGATGATTTAGCCTATTCAGTAACATCTCTGAAGACCATCCCGGAGCTTTGCCGAAGATGCGACTCTCAGAACGAAGAAAGACAAGTTCCAGGTACAAACTGGAGCGGTGGCGTTTCGTCCCACAGTGGAAGTGGAATTAAACCCACTGGCATAGCAGAAGTGTACAGCAAATTCAGACCAGTGAAAAGGGTCTCCCCGCTGAAACGCCAGCCCGAAACCACAGACAATGAGACGGACAATGACCAGCCAGAACAAAAAGGAGACTACAGCAAAGAAGAGACCTCTGAAAAGCAGCCTCAGCCTAGCTTGTCTCCCAGTGACAGCCAGGGCTTTAAAGGGAAAGATGCCGGCACTGGGGTGCTGTTTGGAGAGCTGGAGCACTATGACCTGGACATGGACGAGATTCTGGACGTGCCTTACATCAAGTCAAATCAGCAGCTCTCTGCTCTGTCGAAGGGAGCCGCCGAGAAAAGGACTGCGGGTAGCGGCGTGAGCGACAAAGGTCACGGCAACAAGACCTGCTCTGCGGCGAACGGCGAGAACCTGCCAGCGAGCTTGACCCAGTTCTGCGTGCTGTCCCCCGTGAAAAGCTCAGACCTGAGAAAGACGCCGGCTATTGTCGCAGACCAGCACAGACGCCCGGCTGCAGGATTAGAGCTTTCCCAGAATCTGCTTAGCTGTGGCTCAGTTCCCGAAGCTGAGACCCAAGTGAAAAGCTTCCCAAACAGGACGTTTTCGGATTCCCATGCTCATAAGGCCGACAAAGCGATGCCCAACTGCCAGCCCAGGATTTTCCAGCTGCAGAACCTGCCTGCAGATAGCAAGCTGGACGAGAACAGCAACAGGGCCTGGGGCAGCCCGGGGGGACCGGGGGAGCGCAACGAGGAGGCAAAGAAGGTGAAGAGCATCCTCAACATCATCCGAGAAGGGCAGATATCCTTGCTGCCTCATTTAGCCGTGGATAACCTGGAGCAGATCCACGATGAGAATGGAAACAACCTGCTTCATGTCTCGGCCTCCCAGGGCCACGCCGAATGCTTACAGCACCTCACCTCTCTCATGGGGGAGGACTGTCTGAGCGAACGCAACAACGAACAGCTCACTCCTGCCGGCCTCTCCATCAAGAATGGGCGCCTGGAGTGCGTTCGCTGGATGGTGAGTGAAACGGAGGCCATTGCAGAACTCAGTTGCACCAGAGACCACCCCAGCCTGATCCACTATGCTGCATGTTATGGGCAGGAAAAGATTCTCCTGTGGTTATTGCAGTTCATGCAAGAACAAGGGATTTCATTGGATGAAGTTGACCAATACGGAAACAGTGCCGTCCACATTGCATCTCAGCACGGCCATCTGGGCTGCATCCAGACCCTGGTGGAATATGGTGCCAATGTTACCATTAACAACCAGCACGGAGAAAAGCCATCCCAGAGTGCTGAGCGACACGGACACACCACCTGCTCACGCTACCTTGTGGTTGTGGAAACATGCATGTCCCTGGCATCACAAGTTGTCAAGTTAACCAAGCAGCTGAAAGAGCAAACTACTGAAAGAATCACTTTGCAAACTCAACTACAGCAGCTACTGGAAACACAGCAACTGGAAGAGGGCACGCCAGTTGAATCTCCCAGttCACCTTTGTCCCCCGCAGTAACCAGGCCCCAAGTGCCTTTTTCACCAGAACACAAGACAATGGACACTACCCACTCAGCCCTCCAGAGGAGCTGTGCCGGCACTCTGCCTGGCCGCCGGCTCGTCAAGCAGAAGGAGGAAGACTCTGATAAGATTCTGCGACAGCTTCTGGGAAAAGAGATAGCAGAGAACGTGTGTACCCAAGAGAAACTATCACTGGAGTTCCAGGATGGGCAGAGAGAAGGCTCTGGAACGGGCCCCAAGATACTGAAGAGGATGCCAGCCGAGAAGAGAGAGCTTAAACTGGCTAGACTGAGACAGATCATGCAGCGCTCCCTCAGCGAGTCGGACACGGATTCCTATCACTCGGAAGAGCAGAAAAACACTCCGGTCAAGAGAGCTGACAAACCCCGCCCTCTACCTATTGTAGAAAATGTGGAGTGTACTGAGAGTTTACACCTAATGATCAAGAAGCACACTTCCGCGGCTGGACGCAAGTACGCCTTTGCCAACAGTGTTTCAAAGTCCATGGATGGACACAGCCCCTCGCCCACTTCAGAAGGCAGCGACCCGGATTATGAATCGCAGTACCAGGCGGGGATTCTCCCGAGAACTGGAGTGACTGGGGAAGTGCCCCCGTCTGCCTCTGAAAATGCTAATAACCAAAAGGTTACCACAAGCCCCAAAAGTGCCCTCAAATCTCCATCCTCAAAGAGAAGAACATCCCAAAACTTGAAACTCAGGGTGACCTTTGAGGAGCCAGTTGTGCACATCGAACAGACGGAAGGGGAAGCGAATAGTAGCAAAGGAAAAGAGAGCGATAAAGGCGTGTCCAGGACTGCCCAAAGCACGGACTCGGGTGATGCGTGGAAAAGACCGTTTGGAACGTTCAGATCCATCATGGAGTCTCTGAGTGGAAACcagaacaataacaataacaattatcCAACGGCTGCTATAGTCAAAACACCCCCATCTGGTTTACTACTGACTTCGACAGGAAGGaaacaagcagaaacaaaagcacACCAAATTAGCCCCACAAAGTTAAAGAGCAAAACAGATACTTGCATCTTCAGTCGCGATCACCCTTGCATGCTGATTACTGATGACCTTCATAATATGTACACTGCATGcaCTGATGACTTGATCAATTGTCAGGAGGAAAAAACTATGGCCAGTGCAGAAGACCCAGAGTTACTGGAATTCTTCTTGTGAGAGCATCGTCTTCCCAAATTTGTGCGGATGGTCTAATGGCTGCTACAGGTCACTTTGAGCAGCCCTGGATTCAAGGAATAGAAGGGGACGCAGATTTTGAACACTGCTTTTCAAGAGAATACTTCAAGAAGGAAGTCAAAGGAATCGAAGTGTTTGGAGAATATGAAATCCGtttcatactttttatttttctcgtAAACTGACACTTGTTTGctaaagctatttttaaaaacctatgCACTTTCGCAAGCAATTTAACATCATACATGTATTTCTAAATCTTTTTGCAACAACACATCTGATGAAGATATGGCCTTGTAATTCTTTTCTAAAATGAAGTAGTGTTAATTGTAAAGAATGTTATTTTGTGACTTTTTGGGTTTGGGGGGGtgcatgctttttttaaataaaactgaactgtGGATTGCTAGCTCTAGAAGTTCATGATAGCTAAAGAATGCAGAGTCGAGACATGGGATTTGCAGTACTTTGATTACTGTGGTACacaattttgtttaatgtaacatTGTTTATGTGCAgaatttctgtttctgtgtttcactGCTTTGTTTCCTCTGAGTTACAGAGTATCAGAACAATACAACTTTTTTGAGATGACGGCAAAGTCATGAAGGATCTTTTGACTTTTATGTACAATTTGCTGAACTAAAAGTCAAAAGCTCTCCACACTTTCATGGCcgaattgattgattttattttgctgaagtATGCCAATGGCTTTCACACAACTGCAGGctgtatttttgtctttaatattGAAACCTTAACACACTTCAATAAAAATAggggaaaacattttgtattttccttaccatattta

Function

GO: NA

KEGG:

id description
K04558 SNCAIP; synphilin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101487 lncRNA upstream 36965 33936414 ~ 33938237 (+) True AMCG00010529
TU101405 lncRNA upstream 659633 33310852 ~ 33315569 (+) True G81279
TU101342 lncRNA upstream 947242 33026897 ~ 33027960 (+) True G81226
TU101326 lncRNA upstream 1006695 32968261 ~ 32968507 (+) True G81215
TU101243 lncRNA upstream 1300548 32576649 ~ 32674654 (+) True G81149
TU101528 lncRNA downstream 32850 34032704 ~ 34035798 (+) True G81372
TU101539 lncRNA downstream 102984 34102838 ~ 34104640 (+) True G81383
TU101567 lncRNA downstream 196213 34196067 ~ 34196426 (+) True G81407
TU101639 lncRNA downstream 680122 34679976 ~ 34680716 (+) True G81474
TU101644 lncRNA downstream 684435 34684289 ~ 34685762 (+) True G81479
AMCG00010524 mRNA upstream 20587 33950962 ~ 33954615 (+) True AMCG00010524
AMCG00010529 mRNA upstream 37262 33934595 ~ 33937940 (+) False AMCG00010529
AMCG00010520 mRNA upstream 305022 33659817 ~ 33670180 (+) True AMCG00010520
AMCG00010518 mRNA upstream 336246 33617022 ~ 33638956 (+) True AMCG00010518
AMCG00010517 mRNA upstream 367123 33601543 ~ 33608079 (+) True AMCG00010517
AMCG00010526 mRNA downstream 39925 34039779 ~ 34057802 (+) True AMCG00010526
AMCG00010530 mRNA downstream 58012 34057866 ~ 34083688 (+) True AMCG00010530
AMCG00010527 mRNA downstream 84040 34083894 ~ 34085059 (+) True AMCG00010527
AMCG00010528 mRNA downstream 95297 34095151 ~ 34099552 (+) True AMCG00010528
AMCG00010522 mRNA downstream 115282 34115136 ~ 34120020 (+) True AMCG00010522
TU101485 other upstream 39786 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 4471751 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 6068373 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 6100271 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 6418195 27556415 ~ 27557007 (+) True G80249
TU101662 other downstream 701584 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 1012461 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 1470481 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 2077259 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 2091685 36091539 ~ 36094376 (+) False AMCG00010585

Expression Profile