RNA id: AMCG00010527


Basic Information

Item Value
RNA id AMCG00010527
length 195
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00010527
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 34083894 ~ 34085059 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGTTTTTAAAATCGATGTTCTTACGAGTGGAAGGCAGCACTCAGTGGAGAAGCGCTACAGTGAATTCCATGCCCTGCATAAAAAGctaaaaaaatgtataaaacctccGGAGATTCCATCCAAGCATGTGAGAAATTGGGTTCCTAAAGTACTTGAGCAAAGACGACTCGGGCTGGAAGTATATCTGCAG

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101528 lncRNA upstream 48096 34032704 ~ 34035798 (+) True G81372
TU101487 lncRNA upstream 145657 33936414 ~ 33938237 (+) True AMCG00010529
TU101405 lncRNA upstream 768325 33310852 ~ 33315569 (+) True G81279
TU101342 lncRNA upstream 1055934 33026897 ~ 33027960 (+) True G81226
TU101326 lncRNA upstream 1115387 32968261 ~ 32968507 (+) True G81215
TU101539 lncRNA downstream 17779 34102838 ~ 34104640 (+) True G81383
TU101567 lncRNA downstream 111008 34196067 ~ 34196426 (+) True G81407
TU101639 lncRNA downstream 594917 34679976 ~ 34680716 (+) True G81474
TU101644 lncRNA downstream 599230 34684289 ~ 34685762 (+) True G81479
TU101655 lncRNA downstream 609800 34694859 ~ 34696304 (+) True G81489
AMCG00010530 mRNA upstream 206 34057866 ~ 34083688 (+) True AMCG00010530
AMCG00010526 mRNA upstream 26092 34039779 ~ 34057802 (+) True AMCG00010526
AMCG00010523 mRNA upstream 84040 33975202 ~ 33999854 (+) True AMCG00010523
AMCG00010524 mRNA upstream 129279 33950962 ~ 33954615 (+) True AMCG00010524
AMCG00010529 mRNA upstream 145954 33934595 ~ 33937940 (+) False AMCG00010529
AMCG00010528 mRNA downstream 10092 34095151 ~ 34099552 (+) True AMCG00010528
AMCG00010522 mRNA downstream 30077 34115136 ~ 34120020 (+) True AMCG00010522
AMCG00010525 mRNA downstream 50554 34135613 ~ 34141779 (+) True AMCG00010525
AMCG00010533 mRNA downstream 135757 34220816 ~ 34228666 (+) True AMCG00010533
AMCG00010534 mRNA downstream 157720 34242779 ~ 34252058 (+) True AMCG00010534
TU101485 other upstream 148478 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 4580443 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 6177065 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 6208963 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 6526887 27556415 ~ 27557007 (+) True G80249
TU101662 other downstream 616379 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 927256 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 1385276 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 1992054 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 2006480 36091539 ~ 36094376 (+) False AMCG00010585

Expression Profile