RNA id: AMCG00010528


Basic Information

Item Value
RNA id AMCG00010528
length 1558
RNA type mRNA
GC content 0.35
exon number 5
gene id AMCG00010528
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 34095151 ~ 34099552 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAACCTGCCAAGATTTGAGGTATAAAATTGACTAAAACATTAATGTGTGATTCTGAttcttttgttgtgttacagaCTATAATCATGGAGAATGAAGTTCTTCCCAAAATATTTCTTGATTTTCTTAATATCCGCCACTTTCCTTCTTTGCCAAAAACAGAGAGTTGTGGatCCCTTGATGAGACTGAATCTGAAGAATCGAGacACCAGAGAGCAATCGGAACTGGTAAACCAACGTCCACTGATGCTGACACTCCTGTTCTTGACCTTTGCAGTAAACTGTCCCATCAGCCCGTGCTGCTGTTCCTGAGGGATCCATATGTCTTGCCTGCAGCCGATGATACATTTACAAACGTGGTTATTGAAGGTGTTATTCATGGCATCTTCTACCCAGATCTTCAACCAAAATAGACAATGCAATAATGGAGGCTGATGAAGAGTTGTTTAAACTGGACAAAAGGGAGTTTACAACActaaaaaggttttgttttgaaacatttagATGTGTGGATTATCAAAGTATTGCACTATGACTAATGAAATAATCCAAGACTAGCAATGAGACTGGTGCTACTCAGAATAAGGTAATCTGTTGAGTCAAACTTCTAGAAGTTGATTGTTTGCTGAACTAATATGAGCCAAACTGAAAAGTGTCACATGGAATATTTTATACCATTATAAAGAGATATTTATTGCTGCATTTAAAGCAGATATGAAAAGCTGTTTCTATATACTGGTGGGAAAGTATGGAAACTACTTTACAGCTGGCAAATCATGGCTGACGTGTTAAATCAACACTACTTAGAATAACTGACATAACTGTGAGAAACTTAGATACTAGTGTGAGCtgacattttataatataaaaggTAGTATCTCCGTTGTATCCTATGtctatgtttatttaaaaactatattttttaaataagaaatatgtttGACTGACTTAGCATccatttgggaaaaaatatatcatgtaAACTACTTTTATAATAtcgtttgtgtgtttctgttgctATATCACCCTATTAATTTGTGATCAGAGACAAAAATTGAGCTTTGATAGGGTTATTGCTTCTGGAAAGACACGTTTAGTCATGTAATGTGGCAAAATTAATCTgatattttgttctgtgtttaagaaaacaacaaatctatGTGTGACAAGGCTATATCAGGTCCTCTAACTAAATATCATActaagaatgaaaaataacgCTAGAAAACTCCTAGAGATTGAATTGTCTTCCAATTTGTATTCATACGAAAGCTGTGGCACGTGTCTTCTTCCAGCAGtgaattttaattgtgaaaatagGTTCAATAAATCCCATCACCAGCTAGTCGTAGTCAGGTTTTCTGTACCGAACACACAAGATCAAGACACTTGTTTAGCATCTAGATGCACCATAATCATTTCCATTCAATTTTGAAATGTTGAGTGTGAGTATAGCTATAAACGTGTTGTCGAGGTGTGGTTTTCCAGCACTTTGTGTACAGttattaaatctgaaaatagggatacaatgtacagtaataaagcaaattaaaacacaa

Function

GO: NA

KEGG:

id description
K17941 SNX22_24; sorting nexin-22/24

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101528 lncRNA upstream 59353 34032704 ~ 34035798 (+) True G81372
TU101487 lncRNA upstream 156914 33936414 ~ 33938237 (+) True AMCG00010529
TU101405 lncRNA upstream 779582 33310852 ~ 33315569 (+) True G81279
TU101342 lncRNA upstream 1067191 33026897 ~ 33027960 (+) True G81226
TU101326 lncRNA upstream 1126644 32968261 ~ 32968507 (+) True G81215
TU101539 lncRNA downstream 3286 34102838 ~ 34104640 (+) True G81383
TU101567 lncRNA downstream 96515 34196067 ~ 34196426 (+) True G81407
TU101639 lncRNA downstream 580424 34679976 ~ 34680716 (+) True G81474
TU101644 lncRNA downstream 584737 34684289 ~ 34685762 (+) True G81479
TU101655 lncRNA downstream 595307 34694859 ~ 34696304 (+) True G81489
AMCG00010527 mRNA upstream 10092 34083894 ~ 34085059 (+) True AMCG00010527
AMCG00010530 mRNA upstream 11463 34057866 ~ 34083688 (+) True AMCG00010530
AMCG00010526 mRNA upstream 37349 34039779 ~ 34057802 (+) True AMCG00010526
AMCG00010523 mRNA upstream 95297 33975202 ~ 33999854 (+) True AMCG00010523
AMCG00010524 mRNA upstream 140536 33950962 ~ 33954615 (+) True AMCG00010524
AMCG00010522 mRNA downstream 15584 34115136 ~ 34120020 (+) True AMCG00010522
AMCG00010525 mRNA downstream 36061 34135613 ~ 34141779 (+) True AMCG00010525
AMCG00010533 mRNA downstream 121264 34220816 ~ 34228666 (+) True AMCG00010533
AMCG00010534 mRNA downstream 143227 34242779 ~ 34252058 (+) True AMCG00010534
AMCG00010537 mRNA downstream 559805 34659357 ~ 34673101 (+) True AMCG00010537
TU101485 other upstream 159735 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 4591700 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 6188322 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 6220220 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 6538144 27556415 ~ 27557007 (+) True G80249
TU101662 other downstream 601886 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 912763 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 1370783 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 1977561 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 1991987 36091539 ~ 36094376 (+) False AMCG00010585

Expression Profile