RNA id: TU101485



Basic Information


Item Value
RNA id TU101485
length 690
RNA type TUCP
GC content 0.39
exon number 6
gene id AMCG00010529
representative False

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 33903815 ~ 33938237 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGACGGAAACAACGTGTTTGAACAAACTGAGATACAGTAAAGCATTTaagttttgtaaatgtgtattttaagatcttaaattaaaaagggaGAGTCGAGATGGAACAAGTtctaaatttaaacaatgaGGTGGTGAAGATGAGAAAAGATGTGAAGAAGGCAAAAGCATTGATTATCCGGAAGCTAACGAGGCACATTGCTGAGCTCAAATCCAAAAaAGGCAAAGCAGAAGAAGTTGAGAAGAACCAAAGGCGAGTGGGGAGACTGTTAGAAGAAATACATGAAATGAAGaCTTTAAAACCTGATGAAGTTACAAAGGCGGCCCTGCAAAAGAATCTCAACTTTGAACAAGTCtgtaaaaatcCAAAGTCTACAACGTCAGACAGAGCAACTGCACGAATTGCATCACACCCACTaatcagcaaaaaaataatagacaTTAAAgCTGCCATTAAGGCATTCAAAGACGAGCGGAAAAAGTctttaaaaggcaaaaaagCTCCACAGCTGGGAAAGATTGACAAGGACACTTTGAAGCCAACAGATGAACGCAAAGGGGAATGCACCTCTGAGGAAACGGAGAAGAGTACTGATAAGTGTGCTGAAGTGAGCTGTGATGACATAAATGAAACCAAAGAGATTGTTCCAACAAAAGAGATTGTTCCAACAAAAGAGATTGTTCCAACANNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101405 lncRNA upstream 588246 33310852 ~ 33315569 (+) True G81279
TU101342 lncRNA upstream 875855 33026897 ~ 33027960 (+) True G81226
TU101326 lncRNA upstream 935308 32968261 ~ 32968507 (+) True G81215
TU101243 lncRNA upstream 1229161 32576649 ~ 32674654 (+) True G81149
TU101202 lncRNA upstream 1373549 32474033 ~ 32530266 (+) True AMCG00010497
TU101487 lncRNA downstream 998 33936414 ~ 33938237 (+) True AMCG00010529
TU101528 lncRNA downstream 97288 34032704 ~ 34035798 (+) True G81372
TU101539 lncRNA downstream 167422 34102838 ~ 34104640 (+) True G81383
TU101567 lncRNA downstream 260651 34196067 ~ 34196426 (+) True G81407
TU101639 lncRNA downstream 744560 34679976 ~ 34680716 (+) True G81474
AMCG00010520 mRNA upstream 233635 33659817 ~ 33670180 (+) True AMCG00010520
AMCG00010518 mRNA upstream 264859 33617022 ~ 33638956 (+) True AMCG00010518
AMCG00010517 mRNA upstream 295736 33601543 ~ 33608079 (+) True AMCG00010517
AMCG00010519 mRNA upstream 320376 33538850 ~ 33583439 (+) True AMCG00010519
AMCG00010511 mRNA upstream 794105 33105932 ~ 33109710 (+) True AMCG00010511
AMCG00010524 mRNA downstream 15546 33950962 ~ 33954615 (+) True AMCG00010524
AMCG00010523 mRNA downstream 39786 33975202 ~ 33999854 (+) True AMCG00010523
AMCG00010526 mRNA downstream 104363 34039779 ~ 34057802 (+) True AMCG00010526
AMCG00010530 mRNA downstream 122450 34057866 ~ 34083688 (+) True AMCG00010530
AMCG00010527 mRNA downstream 148478 34083894 ~ 34085059 (+) True AMCG00010527
TU100533 other upstream 4400364 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 5996986 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 6028884 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 6346808 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 7509293 26380467 ~ 26394522 (+) False AMCG00010369
TU101662 other downstream 766022 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 1076899 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 1534919 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 2141697 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 2156123 36091539 ~ 36094376 (+) False AMCG00010585

Expression Profile