RNA id: AMCG00010537


Basic Information

Item Value
RNA id AMCG00010537
length 1920
RNA type mRNA
GC content 0.42
exon number 13
gene id AMCG00010537
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 34659357 ~ 34673101 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTACTGATGACAGAACAGCAGCCCAGCCATCAGACCCCGCTCTCGGCGTCGGTGGAGGACGTGAAGCCGGCCAGGACGCCAAGCAAGAGAGACCCAAAGACGATCGGGTCCAACTGCGAAGTTGAGAATGGGAGCGAGGAGAAACAAAAGAGAGCTGCAAAGCCCAGCGCCGATCAACCACAGCCATCGGAGATTGACACCGAGCCCTCCGAGAGCCGAAAAAAGCCGCCTCTTttttccaaaacaaatgcacagtatcACAAAATATTCAAAGAAATAAGTAAAGAGGAGCTACTCAGACAAAGTTATACTTGTGCCTTGCAAAAAGATATCCTCTATCAGGGAAAACTGTTTGTCTCGGAAAACTGGATCTGTTTCCATTCCAAAGTCTTTGGAAAAGATACAAAGATTGCTATTCCAGTAACATCTGTGAccctgattaaaaaaacaaaaactgccatTTTAGTGCCAAATGCACTTGTTATCGCAACCACGACTGACCGGcaccTATTTGTGTCCTTTCTCTCAAGAGATACTACCTACAAATTCTTAAAATCCATCTGCTTTCATCTCGATGGAAAAAGTGCTGGAAACAGTCCCATCCCCTCTTCCACAGAGAACAGTTTCAGGGCTGAGCGCCCCTCATCTTTGCCTCTGGATTTTTCAGGAGAGTTTTCAGACTTGGATGGGGCAGTGAGGCAGAGGAGGCAGGATATGGCGGAGAGCACAAGTTCAGGTTCCCAGACACCAGAGTTTGAACCCATCACAGaattCCCAGGCATTTCTCCGAATTTCCTCAATGTGGTGAATAACGGGGAGATTCCAGTCCATGCCGACATTCACATCAAGCAAAACCCAGAAGTGAAGCTAAGTCCACACAGGAATGGTCCTTCCAGGTTGGTGGGGGTTGTCCATAAAGTGAAGTCGTTGCAGCCGATGTCTTTAAATACCCTCCTGCTGGTCTACTTCTTTCTAGTGTGCATTCTGGTTATCTCTTCATGTTATATGGCTTTCAAAATCATGGCTTTGGAACAGCGCCTGACCTCGCTGGGCTCCATGGCAGAGTACCAGCACACTGAAAATGTGGTGCCACGAAGTTCAAGAGTTCAGATGGACATTGGTGCAGAAATTTATGGGGAGTTATCGTCAAACCTGTTGAAGCTAGAGAAGATTCAAAGAAACTTGCAAAGACTGTTAGATGAGACTGAGTGAGGGACTTGGATATGGGCTAAACCATGCTTACCTGATATTGGTATCTTGCTGCTTGTCTTTTTGGACCACCGTGTGTACATGCAAACTCTGCTGAGCGGAAACGACAGATAAAAAACACCATGTGGCCTTACTTTTGTGGAATGTAAAAGTTCTTAATTGTGCAATACGATTCTATTTTGTCAGTTCCCTTTTGAGGACTAAACTGCACTACATTTCAATTACTTAGACACTTGAAATGGAGGGTTATAAACAGGCCTTTGCCCAAAGatgatttgttttgtagcaGTAAGAGCTAATTAAAGGgtaaaaaaaagtaacactCCAAATACAGGTGAATTGGGTTGACTTAGGCCTTAAAAACGCATGTGCTGGATACATGCGTCTGAGGTGGAGATAACATCTCTATGCTGTCAAATGTGATTTAAGATTTTGTAAAAGAATAAAGAACGTATTTATGTCATTAAAATTTCATTAAAGTCTATTCTTCATGTGGCCTTAagtctttcagtttttttgttttgtaaccagatttaatttcatcagaaaaaaaaaaaaaaactgttgtgaAGCCATTAGATTAATGTATATGAGCTGTAATTGAGTACATTTTAACCATTTctgtgaaatgtttgaaattggaaataaaaaagaaagcattgtCTTCGTTTATttgatgtgtattttgcattaagctttccctttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101567 lncRNA upstream 462931 34196067 ~ 34196426 (+) True G81407
TU101539 lncRNA upstream 554717 34102838 ~ 34104640 (+) True G81383
TU101528 lncRNA upstream 623559 34032704 ~ 34035798 (+) True G81372
TU101487 lncRNA upstream 721120 33936414 ~ 33938237 (+) True AMCG00010529
TU101405 lncRNA upstream 1343788 33310852 ~ 33315569 (+) True G81279
TU101639 lncRNA downstream 6875 34679976 ~ 34680716 (+) True G81474
TU101644 lncRNA downstream 11188 34684289 ~ 34685762 (+) True G81479
TU101655 lncRNA downstream 21758 34694859 ~ 34696304 (+) True G81489
TU101677 lncRNA downstream 83418 34756519 ~ 34845876 (+) False AMCG00010545
TU101758 lncRNA downstream 335471 35008572 ~ 35012190 (+) True G81575
AMCG00010534 mRNA upstream 407299 34242779 ~ 34252058 (+) True AMCG00010534
AMCG00010533 mRNA upstream 430691 34220816 ~ 34228666 (+) True AMCG00010533
AMCG00010525 mRNA upstream 517578 34135613 ~ 34141779 (+) True AMCG00010525
AMCG00010522 mRNA upstream 539337 34115136 ~ 34120020 (+) True AMCG00010522
AMCG00010528 mRNA upstream 559805 34095151 ~ 34099552 (+) True AMCG00010528
AMCG00010539 mRNA downstream 15647 34688748 ~ 34694681 (+) True AMCG00010539
AMCG00010540 mRNA downstream 35259 34708360 ~ 34721676 (+) True AMCG00010540
AMCG00010544 mRNA downstream 96568 34769669 ~ 34784663 (+) True AMCG00010544
AMCG00010545 mRNA downstream 124986 34798087 ~ 34844851 (+) True AMCG00010545
AMCG00010546 mRNA downstream 174807 34847908 ~ 34857521 (+) True AMCG00010546
TU101485 other upstream 723941 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 5155906 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 6752528 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 6784426 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 7102350 27556415 ~ 27557007 (+) True G80249
TU101662 other downstream 28337 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 339214 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 797234 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 1404012 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 1418438 36091539 ~ 36094376 (+) False AMCG00010585

Expression Profile