RNA id: AMCG00010544



Basic Information


Item Value
RNA id AMCG00010544
length 594
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00010544
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 34769669 ~ 34784663 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCTGACCCGGGGGAACATTACCACATTTCTGTCCCACCGCACTTTCAAGACCTCGACGAAGAGACGTTGCCCCCGTTTCCTCCTCCTGCATCCCCGCCATCTCGTCCGTCTGCGGCCACCGGAGCCAGCAGCCCCTCCGTCACTTCAGAGGAAGATGAGGAAGAAGGAGTGGGTGGTCGGCTGCTGAGTCAGATGGAAGAGAAGCCGGTCCTGCACAGGAAAGATTCAAGAGCTGAGCTGGATGTGCAGAAGCTTGTGTCTGAGAAAGGGATTCCTGCCTTGCAGAATATgcttgaaaatatgtatttcaaaggCCAAGGATATGAAGCGGAGAACCTGCAGGCTCTTCTTCAATGTGTCCAGTGCTGGGCTGAAGAGCTGTTTCCACAACTAATGTTTGAGGACATCATTAAGAGCTTGGAGGAAATTGGGGAGCACCCAGAAATACAGGTTATGATCAAAATGTTTGCCTGTGATTGTAAAGTGCTGGTTATACACAATGAGTCCATTTGCAGAGAGGCACACTCTGACCACCAGGACTGTAAACCTGCCCAGACCACACATCTGCGCCTCCCTGAGCCTGTGCATTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101655 lncRNA upstream 73365 34694859 ~ 34696304 (+) True G81489
TU101644 lncRNA upstream 83907 34684289 ~ 34685762 (+) True G81479
TU101639 lncRNA upstream 88953 34679976 ~ 34680716 (+) True G81474
TU101567 lncRNA upstream 573243 34196067 ~ 34196426 (+) True G81407
TU101539 lncRNA upstream 665029 34102838 ~ 34104640 (+) True G81383
TU101758 lncRNA downstream 223909 35008572 ~ 35012190 (+) True G81575
TU101760 lncRNA downstream 228292 35012955 ~ 35013654 (+) True G81577
TU101763 lncRNA downstream 231412 35016075 ~ 35016334 (+) True G81580
TU101764 lncRNA downstream 232246 35016909 ~ 35017132 (+) True G81581
TU101765 lncRNA downstream 254594 35039257 ~ 35039467 (+) True G81582
AMCG00010540 mRNA upstream 47993 34708360 ~ 34721676 (+) True AMCG00010540
AMCG00010539 mRNA upstream 74988 34688748 ~ 34694681 (+) True AMCG00010539
AMCG00010537 mRNA upstream 96568 34659357 ~ 34673101 (+) True AMCG00010537
AMCG00010534 mRNA upstream 517611 34242779 ~ 34252058 (+) True AMCG00010534
AMCG00010533 mRNA upstream 541003 34220816 ~ 34228666 (+) True AMCG00010533
AMCG00010545 mRNA downstream 13424 34798087 ~ 34844851 (+) True AMCG00010545
AMCG00010546 mRNA downstream 63245 34847908 ~ 34857521 (+) True AMCG00010546
AMCG00010547 mRNA downstream 118840 34903503 ~ 34904362 (+) True AMCG00010547
AMCG00010550 mRNA downstream 145884 34930547 ~ 34931155 (+) True AMCG00010550
AMCG00010548 mRNA downstream 177685 34962348 ~ 35003888 (+) True AMCG00010548
TU101662 other upstream 62275 34701438 ~ 34707394 (+) True G81496
TU101485 other upstream 834253 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 5266218 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 6862840 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 6894738 27869457 ~ 27874931 (+) False AMCG00010393
TU101759 other downstream 227652 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 685672 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 1292450 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 1306876 36091539 ~ 36094376 (+) False AMCG00010585
TU102256 other downstream 2445765 37230428 ~ 37251169 (+) True G81971

Expression Profile