RNA id: AMCG00010545


Basic Information

Item Value
RNA id AMCG00010545
length 4435
RNA type mRNA
GC content 0.52
exon number 23
gene id AMCG00010545
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 34756519 ~ 34845876 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgctTCTTGTTGCAGGTTTAACACCTGAAAAGATGGTCCCTTTTATACACCATCGTGGGTCGCTCTTAATTGCATTAACATGCTACTTAATGGAGGCAACATCATCACTGAACCTTGAAGATCCAAATGTTTGCAGCCACTGGGAAAGCTATTCTATTATTGTTCAAGAGTCCTACGCACACCCCTTTGATCAGATATACTATACGAGCTGCACGGACATCCTTAACTGGTTCAAATGTACAAGACACAGGGTAAGCTACAGGACGGCCTACAGACGAGGGGAAAAGACAATGTACCGACGGAAATCACAGTGCTGTGCTGGTTTCTATGAAAGCAGAGAGATGTGCATCCCTCACTGTACTGATAAATGTGTCCATGGCCGTTGTATTGCTCCCAACACCTGTCAGTGTGAGCCCGGCTGGGGTGGACCCAACTGCTCCAGTGCATGTGATAGTGACCACTGGGGCCCTCACTGCAGTAACCGCTGCCAATGCAAGAACAGGGCCTTGTGTAACCCCATCACCGGCGCGTGTATCTGCACTCCTGGATTCAGAGGCTGGCGATGCGAAGAGTTCTGTGAAGCTGGGACGTATGGGAACGGATGCCAGCAGAAATGCCAGTGCCAAAATGGAGCTGCTTGTGACTATATAACTGGAGAATGCAAATGTTCTCCAGGCTACACGGGAGCTTTCTGTGAGGACCTGTGTCCTCCTGGGAAACATGGCCAGCAGTGTGAAGAGAGATGCCCCTGTCAGAACGGAGGCGTGTGCCACCATGTCACCGGAGAGTGTGCATGTCCAGCAGGCTGGATGGGCACAGTGTGTGGCCAGCCCTGTCCAGAAGGGAGGTTTGGGAGGAACTGTTCTCAGGAGTGCCAGTGTCACAATGGAGGAACGTGTGTCTCATCTTCGGGTCACTGTCACTGCAGCCCTGGATACACCGGGGAGAGGTGCCAAGACGAATGCCCAGTTGGGACATTTGGCGTGAACTGTGCCCAGACGTGCcgctgtgtgaatggagcaaaATGCTACCACATCAgcggggcctgtctgtgtgagCCGGGCTACACCGGAGAACACTGTGAGATCCGATTGTGTCCGGAAGGTGTGTACGGCATCAAGTGTGACAAGAAGTGCCCGTGTCacacccacaacacacacagCTGTCATCCCATGTCTGGCGAGTGTTCCTGCAAGCCTGGTTGGTCGGGGCTCTACTGCAATGAGACATGTGCTCCTGGATTTTATGGGGAATCCTGTCAACAAATCTGCAAGTGCCAGAACGGTGCTGACTGCCACAGTGTGACCGGCCAGTGCATTTGCGCCCCGGGATTTAAGGGCCGAGACTGCTCCACGCCCTGTCCTGAAGGAACTCACGGGGCCAACTGCTCGTCCACGTGTAACTGTAAGAACGGAGCCACGTGCTCTCCAGTGGACGGCTCGTGCTCTTGTAAAGCAGGTTGGCATGGTGTTGACTGCTCTATAAATTGCCCCAGTGGCACCTGGGGTCTGGGCTGCAATGTCACCTGTATGTGTGCTAACGGGGGGGCCTGCAACGCTCTCAATGGCATGTGTACCTGTTCCCCGGGCTGGAGAGGGCAGAAATGTGAATTGCAGTGCCAGGATGGGACCTATGGCATGGACTGCACTGAGCGCTGTGACTGTAGCCACGCGGATGGCTGTCACTCGGCCACAGGTTACTGCCGCTGCCTGGCAGGCTGGACTGGAATCcactgtgacagtgtgtgtgccGAGGGTCGCTGGGGTCCGAACTGCTCGCTCTCCTGCACCTGTAAGAACGGGGCGTCCTGCTCCCCCGACGAGGGCACCTGCGAGTGCGCCCCGGGATTCAGAGGGACCACCTGCCAGAGGATTTGTTCCCCTGGTTACTTTGGCCATCGCTGCAGCCAGGCGTGCCCACAGTGCGTGCACAGCAATGGGCCGTGCCACCACATGACAGGGCAGTGTGACTGCTTGCCAGGGTTCAAGGGAGCCCTCTGCAATGAAGTTTGCCCCAGTGGCCGGTTTGGAAAGAACTGTGCCGGTGTTTGTACCTGCACCAACAATGGGACCTGCAACCCTATCGATGGCTCATGTCAGTGTTACCCAGGGTGGATTGGCAGTGACTGCTCTCAGCCCTGTCCACCTGGGCAATGGGGACCCAACTGTATTCACACCTGCAACTGCCACAACGGTGCTTTCTGCAGCGCGTACGACGGAGAGTGCAAGTGTACTCCTGGCTGGACGGGCCTGTACTGCACACAGCGCTGCCCACTGGGTTACTATGGGAAGGACTGTTCGCTGACATGTCAGTGCCAAAACGGCGCAGACTGCGACCACATATCAGGACAGTGCACCTGCCGCACAGGGTTCATGGGCAAGCATTGCGAGCAAAAGTGTCCTCCAGGCACCTATGGCTATGGTTGCAGGCAGGTGTGTGACTGTCTGAACAACTCCACCTGCGACCACATCACAGGAACCTGCTATTGTAGCCCGGGCTGGAAGGGAGCAAGATGTGACCAAGCTGGCATGATCATCTTGGGCGATCTGAACAGCCTGAGCCACACCAGCACCGTGGTCCCGGCCGAATCCTACCAGATAGGGGCCATCGCCGGCATCATCGTGCTGGTCCTCAttgtcctcttcctcctggCCCTCTTCATCATCTACAGGAAGAAGCAGAAGGGCAAGGAGACCCCCATGCCTGCTGTCACGTACACACCAGCAATGAGGGCCATGAACATGGACTACACCATCACAGAGACCCTTCCGCAGACCAACAGTGGCCATCCCAACAGCAACTACTTCTCCAACCCCAGTTACCACACCCTGACCCAGTGCTCCAGTCCGCCACATGTCAACAACATGGAGAGAGTGCCGCATGGGAAGGCAAGTCGATTAACACTGCTGTTGAATGGCATCTACGCGCAACCGAAAAACAACCAGCTCTTTGTAAATCTGAAGAACGGGGATCCCAGGAAGAGACCCCCAATGATGGACTACACTGGAACCCTACCGGCTGACTGGAAACAAGGAGGCTGCTTTAATGAGCTCGATCTTGTGAAGGGGTCGGCCTATCACTCCAGCTCCTGCTCGCTGAACAGCACAGAGAATCCCTATGCCACCATAAAGGACCCTCCCTTGCTGATGCCAAAGAACACAGAGTGCGGCTATGTGGAGATGAAGTCTCCAGCCCGCAGGGACTCCCCTTACGCAGAGATCGCCAACTCCGCCCCCACCAACAAGAACGTCTACGAAGTTGAACCGACCGTTAGTGTAGTCCATGGGCCTGGCAACAGTACCAGTGGGCCTTTTGGCCAAGACCCATATGACCTTCCAAAGAACAGCCACATTCCTTGTCACTACGATCTGCTGCCTGCCCGGGACagtcccccctccccacacaagGAGCTCAGCAGTGAATGATGCTAGCGGGGGCCGCACTCTCAGACCGCTGTAGGAGCACAGAGACCCACCGTTCTGCCTGGCAAGGAAGCCCTGAGACACGCCCGATGTCCTGCATTGCTGCCTGCTCACCGGCAGCATCTCTCTTCTATAGGGTTTCaccattttgattattattattattattgctattgttattattttaattttgtaatctTGCTTTTCTGAGAAGAACTCTGCAATAGTTTCCGTATCCATTACACAAGTCACAGGGACTCCACACCTCGGGGATCTTAGTTTTAACTCCATTCTCCTTCTGTTCTTTCAtgaattataaaaaagaaatgaataatagCAATCAACAGAGTAACGTGTAAGATATGGAGGAAGATGGTGATAAttctgttttttggggggttaacattcaatagcttccttgtACATCCTGTTTTAGATGCTGCAGATGTTGTTGTACCTTGAAGTCATTCCACTCCTTAATAAAACATATCAGTCAACTGTTtctatagaaaacaaatgtaaaacagaattgaatttatttttgtaacgaTGAACATATACAAGGTTGTTAGCAAATAGGCTATGATAGACTGTACAAGGTTGATTGCCAGTAGAGAGGCCTTGGTTTTATTAATCTAAGGGTGGATATACTAGTACTGTAATACagggtttttatttgtattttgttttatattactgCCACTTtttggtgtttgtgttgtttactGCTTAAATCAAtggtttcttcttcttcacactGTCAAGTAATAATAGTGAGTCCAAAGGAATAGGTGGCCTTCTGAGGCCAGCTAGTACTTTCTATCCTACCAATAGATCTCATGCAATATTGCTAATATCACCATGTTTTAGTAGTAGGCATCCTGCTAGCAGGATTAAAGGGCTTCCGGCAGTACACAGACTGTATTCCCTGGCATTAGGAGGAATCTCTTTTATGAATTCCAGTGTAGATAAATTATGCTTAAGCTGGTCTTTTGCATTGCAATgagcaaca

Function

GO: NA

KEGG:

id description
K24068 MEGF10_11; multiple epidermal growth factor-like domains protein 10/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101655 lncRNA upstream 101783 34694859 ~ 34696304 (+) True G81489
TU101644 lncRNA upstream 112325 34684289 ~ 34685762 (+) True G81479
TU101639 lncRNA upstream 117371 34679976 ~ 34680716 (+) True G81474
TU101567 lncRNA upstream 601661 34196067 ~ 34196426 (+) True G81407
TU101539 lncRNA upstream 693447 34102838 ~ 34104640 (+) True G81383
TU101758 lncRNA downstream 163721 35008572 ~ 35012190 (+) True G81575
TU101760 lncRNA downstream 168104 35012955 ~ 35013654 (+) True G81577
TU101763 lncRNA downstream 171224 35016075 ~ 35016334 (+) True G81580
TU101764 lncRNA downstream 172058 35016909 ~ 35017132 (+) True G81581
TU101765 lncRNA downstream 194406 35039257 ~ 35039467 (+) True G81582
AMCG00010544 mRNA upstream 13424 34769669 ~ 34784663 (+) True AMCG00010544
AMCG00010540 mRNA upstream 76411 34708360 ~ 34721676 (+) True AMCG00010540
AMCG00010539 mRNA upstream 103406 34688748 ~ 34694681 (+) True AMCG00010539
AMCG00010537 mRNA upstream 124986 34659357 ~ 34673101 (+) True AMCG00010537
AMCG00010534 mRNA upstream 546029 34242779 ~ 34252058 (+) True AMCG00010534
AMCG00010546 mRNA downstream 3057 34847908 ~ 34857521 (+) True AMCG00010546
AMCG00010547 mRNA downstream 58652 34903503 ~ 34904362 (+) True AMCG00010547
AMCG00010550 mRNA downstream 85696 34930547 ~ 34931155 (+) True AMCG00010550
AMCG00010548 mRNA downstream 117497 34962348 ~ 35003888 (+) True AMCG00010548
AMCG00010553 mRNA downstream 255264 35100115 ~ 35107055 (+) True AMCG00010553
TU101662 other upstream 90693 34701438 ~ 34707394 (+) True G81496
TU101485 other upstream 862671 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 5294636 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 6891258 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 6923156 27869457 ~ 27874931 (+) False AMCG00010393
TU101759 other downstream 167464 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 625484 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 1232262 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 1246688 36091539 ~ 36094376 (+) False AMCG00010585
TU102256 other downstream 2385577 37230428 ~ 37251169 (+) True G81971

Expression Profile