RNA id: AMCG00010552


Basic Information

Item Value
RNA id AMCG00010552
length 3300
RNA type mRNA
GC content 0.42
exon number 10
gene id AMCG00010552
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35121614 ~ 35139130 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCACTGCCTGGCATGTAGTGCAACACACTGGTCACATGACACGCACTTGGCTCTGCTGCAGCAGATACAGACTTTTCGTTTTGTGCGCGGTTGGTGTAGCAGGAGTGTAATAACAGCAGAGTCTggtgaaaatgttattattgtgcTGACGGATATTTCCAGTCGtgctgttcttgttgttttcctactgggcagcagcagcaatgcTCCTAGCATGGGCGATAGCGTTGCTAGCTGGCTTATGCGCCTTGCATATCCTGCAGAAACACAACTTCCCATACTTTTGGAaggactttttttatttaaccaagGTGATCAGGTACGGGATCAAGATCGAGATGTACAAGATGACTTCTCGAGTGGTCACGGTGCTGGACAGGTTTGTGCAGCAGGCGGAGAGACTGCCCGACAAGCCGTTTGTCGTCTTCGAGGGAAGTGTCCACACGTACCGAGACGTGGATAGAAGGAGTAACAAAGTGGCGCAGGTTTTCAGGACGCACGGAGCCGTGCAGAGAGGCGACATTGTGGCCCTTTTAATGAGCAACGAGCCCGACTTCATCTGCACCTGGTTCGGGCTCTGCAAGCTGGGATGCGCGGTGGCGTTTCTCAACACCAACATCAAAGCCAGGTCTCTGCTGCACTGTTTCAGCAGCTGCGGGGCCAAAATGCTCATTATCGGCGCAGACTTGATAGACACACTTGAGGATGTCCTGCCCAGTCTGCAGAAGGACAACATCAGTGTGTGGGTGATGGCCAGGCAGGCCACTAAACCTGGCACATGTACTTTGCTGGACAAACTGGACCAGGCCTCTGAAGAACCGGTACCAGCGTGTCTGCGTGCTGTGTCTTCTGTGAAGGCCCCcacattgtatatttttacttCAGGAACCACAGGACTCCCCAAGGCAGCTGTTATTACCCAACTTCAGACACTCAAGGCAGCTGCAGGGTTTTGGGCCTATGGAGCTACTTATGATGACATTGTGTACATCCCCCTTCCCCTGTATCACAGTGCGGCCTCTCTCATTGGAATCGGTGGAACCATCGAATTAGgTGCTACTTGCATCTTGAAGAAGAAATTCTCAGCGACGCAGTTCTGGAGTGACTGTAAAAAGTACAACATAACCGTGTTCCAGTACATCGGAGAGCTCTGTCGCTACCTCTGCAATCAGCCCAGAAAAGAAGGTGAAAAAGACCACAAGGTTCACATGGCGGTGGGGAACGGCATGCGTCAGGACATTTGGAAAGAGTTCCTCGATCgctttgggaacattaaaatgTGTGAGCTCTATGGGTCCACAGAAGGGAATGTTTGCTTCATGAACCACACTGGGCAAATAGGAGCCGTCGGTCGTTCCAATTTCTTCTACAAGttattttttaagtacCAAATGGTGAAATATGATCTGGAGAAGGACGAACCTGTGCGAAACAAACAAGGCTTTTGTGAGCTGGTGCAGAAAGGTGAGACGGGACTGATGTTATCGCAGGTAAATTCGAAGAACCCGTTTTTTGGCTACGCCGGAAGCAAAATGCTCACGGAGAAGAAACTGCTACGGGACGTCTTCAGGAAAGGAGATGCCTATTTTAACACTGGGGATTTAATGTGTGAAGACCATGACAACTTTGTTCATTTCAAGGACAGAATTGGAGATACGTTCAGGTGGAAAGGGgaaaatgttgccacaacggAGGTAACTGACATGATTGGACTGATGGACTTTTTGCAAGAGGCAAATGTATATGGGGTTGAAGTTCCAGGCATGGCAGCAGTTATTCTCAAACCTGGCTGTGAATTCGATGGGAAGAAGCTGTATGAGCACGTAGCCGAACACCTGCCGAGCTACGCACAGCCACGGTTCATTAGAATTCAGGAATCAATGGACATGACTGGAACCTACAAGCAGCAAAAGTTTCGATTAGTGCGAGATGGATTCAACCCTTCACATGTGACAGACCCCTTGTATTTCTTAGATTATTCAGAGAAATGTTACATCCCTCTAACGAAGGCCATCTATGAAGACATTGTCTCTGGGCAACAGAAGCTGTAGCAGTCTGTGTTTTCAGGCTCCTAATTATTGTTCTACTGGCACAACAGTGTAGGAATGGCAATTTAATGCACTATGTAATGTTATACCTGGTGGGCAAAGCAAAGTGCTCCCGGTcaaataatcattaaataattgatgATTTCCTTAGTTGTGAGCAATTTACAGAGACAGTGCAGGTTAATAATACATAACTTTGACATAGTAAAGGTCATGCTAACATCGGTGATCTTAAGATGGCAAAACAATGGAGGAGTTTACATTTCCACTTGCAGTTTCAGCTAGAGACTAGATAGGTTGAGCAATTctgatcatatttttaaatttaagttaTTAGATTAATCTTGGTATTGGTTTTCAGAAATTCCAGATTCAGTCCCCAGTACAGTATAAACCCAGAACATTTCAAGCAAGTAATGAAACCTAAACAGAAAAGCGCCCTCAGTTACTAACTACTTCATCATTCAGTTCTGAACTAAGttaattgttgtttaatttagaCCAATCAGACATTAAAAAGAGCTCAGTAGAGTTCCATTAAAGATTGccaaaatgtgtaatttcagGTAAAAGTTGTAGTGTAtaggtttcatttaattacatttgaaattgaacacagctcaaaatgtcatattatgattacatttttaattttgggaaGGCTCTGTGATGTAATCGCATCTATTACCCTGTActattgtttttacacaaaaatgattgtgttttttcccttactacaaaataaaaaaaatgaataaataagcaaaccaacaaataaataactataataatgaCTATAATCATACAATTTTAACCTTCATAGTTATTGACAATGGATCTTACCTGGAAAGCTAAGCAGTGGGTCTGCTACATatgttgaatatttaaaaagtatcaaTGCTGCTCCTAAATCTTTTTGCATTGCAGATTTTTATGaatttttaaagtattacaaagTGTACAAAATTGTTAAGCTGATTTTTACACCTCATGCTCTGTGTTTTAGCTAAACTGTGCATCTCCAGCTGAGGGAGTACAATCATGTGTTTCCTTGAGGTTTTCACATGGCAGAACATTGTTACTGTTAACAATTACGGGTAATGGACtaaaagttacaaaataaatgtagttgtATTCTGACTAAAGCTGGTTTTCAAGTTAAATATTTCTGGAGTATctgtaaaaagtattttaaggTTTCCTAATATGATCACTACACAAggttaataaaaatattcttaattacatcca

Function

GO: NA

KEGG:

id description
K08749 SLC27A6, FATP6; solute carrier family 27 (fatty acid transporter), member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101769 lncRNA upstream 19030 35102352 ~ 35102584 (+) True G81586
TU101766 lncRNA upstream 71002 35050405 ~ 35050612 (+) True G81583
TU101765 lncRNA upstream 82147 35039257 ~ 35039467 (+) True G81582
TU101764 lncRNA upstream 104482 35016909 ~ 35017132 (+) True G81581
TU101763 lncRNA upstream 105280 35016075 ~ 35016334 (+) True G81580
TU101845 lncRNA downstream 341670 35480800 ~ 35526188 (+) True AMCG00010563
TU101882 lncRNA downstream 523033 35662163 ~ 35666680 (+) True G81675
TU101918 lncRNA downstream 563559 35702689 ~ 35703798 (+) True G81707
TU101920 lncRNA downstream 565069 35704199 ~ 35704527 (+) False G81707
TU101923 lncRNA downstream 568387 35707517 ~ 35713953 (+) True G81710
AMCG00010553 mRNA upstream 14559 35100115 ~ 35107055 (+) True AMCG00010553
AMCG00010548 mRNA upstream 117726 34962348 ~ 35003888 (+) True AMCG00010548
AMCG00010550 mRNA upstream 190459 34930547 ~ 34931155 (+) True AMCG00010550
AMCG00010547 mRNA upstream 217252 34903503 ~ 34904362 (+) True AMCG00010547
AMCG00010546 mRNA upstream 264093 34847908 ~ 34857521 (+) True AMCG00010546
AMCG00010551 mRNA downstream 3436 35142566 ~ 35149632 (+) True AMCG00010551
AMCG00010557 mRNA downstream 43801 35182931 ~ 35183883 (+) True AMCG00010557
AMCG00010555 mRNA downstream 50253 35189383 ~ 35193509 (+) True AMCG00010555
AMCG00010556 mRNA downstream 77088 35216218 ~ 35250157 (+) True AMCG00010556
AMCG00010559 mRNA downstream 111706 35250836 ~ 35257291 (+) True AMCG00010559
TU101759 other upstream 108921 35012315 ~ 35012693 (+) True G81576
TU101662 other upstream 414220 34701438 ~ 34707394 (+) True G81496
TU101485 other upstream 1186198 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 5618163 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 7214785 27906497 ~ 27906829 (+) True G80326
TU101832 other downstream 331205 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 937983 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 952409 36091539 ~ 36094376 (+) False AMCG00010585
TU102256 other downstream 2091298 37230428 ~ 37251169 (+) True G81971
TU102257 other downstream 2096636 37235766 ~ 37251169 (+) False G81971

Expression Profile