RNA id: AMCG00010553


Basic Information

Item Value
RNA id AMCG00010553
length 1545
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00010553
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35100115 ~ 35107055 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCCAAGTCTGTCTTACTGGAGCGGCCACTGCATTGGCAGTCCTGTACACTGTGCTCTGGATTTTTTATCCCTATTTCTGGAAAGATGCAAGTTTTTGGATGAGAACCAAATCTTTCCAACGCAGGATGGGAGCTCTCGTATGTAAAGGGACTAATTCTGTGCTTTGTATCTTCAAGGAGCAAGCCCAGAAATTCCCTAGCAGGGCTTTTATCATATATGAGGATCGTGTTTACGCTTATCAAGATGTGGATAAAAGAAGCAGTAAAGTGGCCAATGTATTCCTTAAGGAGGGAGGTCTGAAGAAAGGTGACGTGGTGGCCTTGCTGATGAACAATGGACCTGATTACATCTGTCTTTGGCTGGGGTTGAGCAAGCTGGGTATCACTGTGTCGATGCTCAATGTGAATATCAGAGCCAAGTCCCTGAAGCATTGCCTCAAGATCTGCAATGCCAAAGCTCTTGTAGCTGGAGCAGATGTTCATACCTTGCTTGATAAGTTAGATGGAGCTTCAGATGCTCCTGTACCAGCTCATCTCTCAACAGTTTCAAGTATAATGGATTCAACGCTCTACCTTTTCACATCTGGGACTACAGGCTTACCAAAGGCAGCGATTATATGTCACAGAAGAGCCTTGATCATCATGCACCTCTTATTCCAGGTTGGGGCAACTAAAGATGAAGTAGTGTATGTTCCTCTTCCGCTGTTCCACTTGACCGGCCTTATCGGTGTTGGAGGATGCATTGTGATGGGAGCAGCATGTGCGGTGAGGAAGAAGTTCTCCGTGAGCCAGTTCTGGGATGACTGTAGGAAATATGATGTTTCCATGATCACGTATATTGGAGAAGTGTGTCGTTACCTGTGCAGTCCTCCCAAGCTGGTGTGCCCATTTGAATTTTTCAAATATGACGTGGTTAAAGATGAAGTAGTTCGAGATGAGAACGGCagatgcattaaattaaaaaagGTTACAAAGTTAAATCCATTTTTGGGCTATGCTGGGGACCTAGAACAAACTGAAAAGAAGCTGATGAGGAATTGTCTGGAGGAAGGAGATGTGTACTTCAACTCAGGAGACCTACTGAGAGTGAACAAGGAGAATTTTGTTTACTTCTGTGACAGGGTTGGAGACGCCTTCAGATGGAAAGGTGAAAATGTTTCCACGACAGAAGTAACAGAAATATTGGGGCAAGTGGATTTTATACAGGAAGCTAATGTTTTTGGAGTAGCTGTACCAGggttCGAAGGCAGGATCGGAATGGCTGCTTTAGTCCTAAAACAGCAGCAAGCATTTGATGGCAAGAAAGTATATGACACCGTTGTAGATCTGCCTGCTTATGCCAGGCCATTCTTTCTGAGGATACAGGAGACCATGGACATTACTGAAACTTTCAAGCACAAGAAAGTTCACCTCCGAAATGAAGGTTTCAATCCAGATACTGTTTCTGACCCGCTTTATGTGTTGGATAACTACAGTAAATCTTACGAACCCATGACTAAAGGGATATATGAAGAGATCATTTCTGGAAAGTTGAAGTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101766 lncRNA upstream 49503 35050405 ~ 35050612 (+) True G81583
TU101765 lncRNA upstream 60648 35039257 ~ 35039467 (+) True G81582
TU101764 lncRNA upstream 82983 35016909 ~ 35017132 (+) True G81581
TU101763 lncRNA upstream 83781 35016075 ~ 35016334 (+) True G81580
TU101760 lncRNA upstream 86461 35012955 ~ 35013654 (+) True G81577
TU101845 lncRNA downstream 373745 35480800 ~ 35526188 (+) True AMCG00010563
TU101882 lncRNA downstream 555108 35662163 ~ 35666680 (+) True G81675
TU101918 lncRNA downstream 595634 35702689 ~ 35703798 (+) True G81707
TU101920 lncRNA downstream 597144 35704199 ~ 35704527 (+) False G81707
TU101923 lncRNA downstream 600462 35707517 ~ 35713953 (+) True G81710
AMCG00010548 mRNA upstream 96227 34962348 ~ 35003888 (+) True AMCG00010548
AMCG00010550 mRNA upstream 168960 34930547 ~ 34931155 (+) True AMCG00010550
AMCG00010547 mRNA upstream 195753 34903503 ~ 34904362 (+) True AMCG00010547
AMCG00010546 mRNA upstream 242594 34847908 ~ 34857521 (+) True AMCG00010546
AMCG00010545 mRNA upstream 255264 34798087 ~ 34844851 (+) True AMCG00010545
AMCG00010552 mRNA downstream 14559 35121614 ~ 35139130 (+) True AMCG00010552
AMCG00010551 mRNA downstream 35511 35142566 ~ 35149632 (+) True AMCG00010551
AMCG00010557 mRNA downstream 75876 35182931 ~ 35183883 (+) True AMCG00010557
AMCG00010555 mRNA downstream 82328 35189383 ~ 35193509 (+) True AMCG00010555
AMCG00010556 mRNA downstream 109163 35216218 ~ 35250157 (+) True AMCG00010556
TU101759 other upstream 87422 35012315 ~ 35012693 (+) True G81576
TU101662 other upstream 392721 34701438 ~ 34707394 (+) True G81496
TU101485 other upstream 1164699 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 5596664 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 7193286 27906497 ~ 27906829 (+) True G80326
TU101832 other downstream 363280 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 970058 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 984484 36091539 ~ 36094376 (+) False AMCG00010585
TU102256 other downstream 2123373 37230428 ~ 37251169 (+) True G81971
TU102257 other downstream 2128711 37235766 ~ 37251169 (+) False G81971

Expression Profile